readme.md

All input PDB chains, DSSP, FASTA, PSSM, and ESM2 files should be inside input/ directory

All distance maps should be inside distmaps/. An example distance map can be found here

Target list: input.list

1. Run gen_aa_structural_features.py (feature files will be saved in tmp/ directory)

python gen_aa_structural_features.py -t input.list

2. Run genpssmto20feat.py (feature files will be saved in tmp/ directory)

python genpssmto20feat.py -i input -o tmp/ -t input.list

3. Run gen_preprocessed_node_features.py to get combined features generated in processed_features/ directory

python gen_preprocessed_node_features.py -t input.list