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Copy file name to clipboardExpand all lines: docs/intro.md
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- Object Classification with Machine Learning using [napari-apoc](https://github.com/haesleinhuepf/napari-accelerated-pixel-and-object-classification) and [napari-clusters-plotter](https://github.com/BiAPoL/napari-clusters-plotter)
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- Reproducible image analysis with [napari](https://napari.org/stable/) and [omero](https://omero.org/) using [napari-apoc](https://github.com/haesleinhuepf/napari-accelerated-pixel-and-object-classification) and [napari-omero](https://github.com/tlambert03/napari-omero)
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## Logging in to OMERO
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1. Download the [OMERO Insight application](https://www.openmicroscopy.org/omero/downloads/) and install it on your computer. This application allows you to connect to the OMERO server and upload images (the web interface cannot be used to upload images).
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2. Connect to the CMCB VPN if you are not already connected. You can find the instructions for this [here](https://intranet.crt-dresden.de/grav/it_department/faq_howto/remote-connectivity-vpn-sftp-ssh) (internal link, needs ZIH login to be accessed).
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3. Open the OMERO Insight application, click on the wrench icon and add the following server address `omero-int.biotec.tu-dresden.de`. This is the address of the OMERO server you will be using during the course.
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```{image} ./apoc_omero_1.png
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:alt: OMERO Insight
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:width: 300px
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:align: center
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```
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Use your ZIH credentials to log in.
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## Setting up the environment
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To follow the course, you will need to have Python installed in your computer.
Copy file name to clipboardExpand all lines: docs/napari_apoc_omero_workflow/workflow_creation.md
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## Logging into OMERO
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Download the [OMERO Insight application](https://www.openmicroscopy.org/omero/downloads/) and install it on your computer. This application allows you to connect to the OMERO server and upload images (the web interface cannot be used to upload images).
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Connect to the CMCB VPN if you are not already connected. You can find the instructions for this [here](https://intranet.crt-dresden.de/grav/it_department/faq_howto/remote-connectivity-vpn-sftp-ssh) (internal link, needs ZIH login to be accessed).
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Open the OMERO Insight application, click on the wrench icon and add the following server address `omero-int.biotec.tu-dresden.de`. This is the address of the OMERO server you will be using during the course.
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```{image} ./apoc_omero_1.png
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:alt: OMERO Insight
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:width: 300px
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:align: center
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```
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Use your ZIH credentials to log in.
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Log in to the OMERO server using the OMERO Insight application. If you haven't installed it yet, please refer to the first page of this book.
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Once you are logged in, you should see the following interface:
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