Merge branch 'master' into master

martenson · web-flow · commit c914c11ef70d · 2026-06-19T07:38:13.000+02:00
diff --git a/combinations/falco:1.3.1-0.tsv b/combinations/falco:1.3.1-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+falco=1.3.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/gwtc_analysis:0.4.2-0.tsv b/combinations/gwtc_analysis:0.4.2-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+gwtc_analysis=0.4.2	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/hash.tsv b/combinations/hash.tsv
@@ -948,3 +948,4 @@ samtools=1.21,star=2.7.3a
 gcta=1.94.1,tabix=1.11
 manc_cojo=1.1.0,tabix=1.11
 lastz=1.0.4,python=3.9
+aoptk=0.5.0,pyyaml=6.0.3
diff --git a/combinations/mulled-v2-1ec6000e599b4e96a97cd02c3969707f792ed0d0:0763a4865fb6983ec3976a0ff2b7b51e403380f6-0.tsv b/combinations/mulled-v2-1ec6000e599b4e96a97cd02c3969707f792ed0d0:0763a4865fb6983ec3976a0ff2b7b51e403380f6-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+openai=2.41.1,pyyaml=6.0.3,python=3.12	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-1ec6000e599b4e96a97cd02c3969707f792ed0d0:0c0b4e92b893be7d7557c57045fdf4e57ee2dc0c-0.tsv b/combinations/mulled-v2-1ec6000e599b4e96a97cd02c3969707f792ed0d0:0c0b4e92b893be7d7557c57045fdf4e57ee2dc0c-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+openai=2.41.0,pyyaml=6.0.3,python=3.12	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-2d89def15ec5f0c75249c2ee4ca452038958f94e:27c6fb6e8989a08d05ecdcf8b340f9a71163e882-0.tsv b/combinations/mulled-v2-2d89def15ec5f0c75249c2ee4ca452038958f94e:27c6fb6e8989a08d05ecdcf8b340f9a71163e882-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+ncbi-amrfinderplus=4.2.7,pandas=2.3.3,python=3.11.14	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-30758c5e2be407d6bbf2570c832fb245e8488634:554912fb4663b66a7db92472d73ef2d27ab8ae27-0.tsv b/combinations/mulled-v2-30758c5e2be407d6bbf2570c832fb245e8488634:554912fb4663b66a7db92472d73ef2d27ab8ae27-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+mlst=2.33.1,staramr=0.12.3	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-324f00fcc905f12684c8db4efa59ce690b349b3f:bde8e359af13cc7a433cdcafc0e78c9126c518d6-0.tsv b/combinations/mulled-v2-324f00fcc905f12684c8db4efa59ce690b349b3f:bde8e359af13cc7a433cdcafc0e78c9126c518d6-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+pyyaml=6.0.3,openpyxl=3.1.5,aoptk=0.5.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-344874846f44224e5f0b7b741eacdddffe895d1e:18b85f3601be544332a791bb9625777e740ff376-0.tsv b/combinations/mulled-v2-344874846f44224e5f0b7b741eacdddffe895d1e:18b85f3601be544332a791bb9625777e740ff376-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+pandas=3.0.3,numpy=2.4.6	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-4614f8b3a5255c4e5ecbc78c1cfaf24d744b06ab:6d7fcfbbcd32cf6c34208183c95483b9ef8b41ca-0.tsv b/combinations/mulled-v2-4614f8b3a5255c4e5ecbc78c1cfaf24d744b06ab:6d7fcfbbcd32cf6c34208183c95483b9ef8b41ca-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+ucsc-bedgraphtobigwig=482,pytrf=1.5.0,python=3.12.3,pyfastx=2.3.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-5f28b0ccab8cf32bdd9ef8be14f9a0b2c5ce05fc:04669bbc8075d379946c0244b0e6f86cbd1e5041-0.tsv b/combinations/mulled-v2-5f28b0ccab8cf32bdd9ef8be14f9a0b2c5ce05fc:04669bbc8075d379946c0244b0e6f86cbd1e5041-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+numpy=1.26.0,pycocotools=2.0.11,opencv=4.13.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-704aee0c18e3278557ac3bedcbb7986e3913f703:4d702b8c3ad3ff53c6023de86a21af7cf31defda-0.tsv b/combinations/mulled-v2-704aee0c18e3278557ac3bedcbb7986e3913f703:4d702b8c3ad3ff53c6023de86a21af7cf31defda-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+stringtie=3.0.3,samtools=1.22.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-91923d75f9a355adda5a674e195f165a4a313e6a:7899d8ade2a80db088359013d10b299ff46267f1-0.tsv b/combinations/mulled-v2-91923d75f9a355adda5a674e195f165a4a313e6a:7899d8ade2a80db088359013d10b299ff46267f1-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-ggplot2=4.0.2,r-base=4.5.2,r-forcats=1.0.1,r-hierfstat=0.5_11,r-dplyr=1.2.1,bioconductor-lea=3.22.0,r-tidyr=1.3.2,r-vcfr=1.16.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-99fa3ebb3aa0e6a6e45c1a4abdb58f209f9afa51:ac703ac0045a40ceebcdb76e73daecbf90f6d726-0.tsv b/combinations/mulled-v2-99fa3ebb3aa0e6a6e45c1a4abdb58f209f9afa51:ac703ac0045a40ceebcdb76e73daecbf90f6d726-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+bioconductor-recount=1.36.0,bioconductor-recount3=1.20.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-9a77e1e1e1503dae8a7085d12eb5afe06e3c9bf0:654f1cb2ef41124dbbc36811f2e25e0342b3c334-0.tsv b/combinations/mulled-v2-9a77e1e1e1503dae8a7085d12eb5afe06e3c9bf0:654f1cb2ef41124dbbc36811f2e25e0342b3c334-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+make=4.4.1,fermi2=r204	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-a438534fcd6b8cecf9b6488c0af1b45e4b0dc965:f7fc154cb016d34cc4e2e37fb3beca771333976a-0.tsv b/combinations/mulled-v2-a438534fcd6b8cecf9b6488c0af1b45e4b0dc965:f7fc154cb016d34cc4e2e37fb3beca771333976a-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-arrow=24.0.0,r-upsetr=1.4.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-a93cfc3f9a394b95c60890563d52b7a0745733b1:4016123313ddad4b370b85c11ba8a30feaa8f03e-0.tsv b/combinations/mulled-v2-a93cfc3f9a394b95c60890563d52b7a0745733b1:4016123313ddad4b370b85c11ba8a30feaa8f03e-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-tsenat=0.99.0,r-optparse=1.8.2	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-b8c00919e78e310f5965a5971fdc4280dbc6cc1c:260561808e82a0d599725c381aea738bc226fecc-0.tsv b/combinations/mulled-v2-b8c00919e78e310f5965a5971fdc4280dbc6cc1c:260561808e82a0d599725c381aea738bc226fecc-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+ncbi-datasets-cli=18.30.1,ca-certificates=2026.5.20	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-b8c00919e78e310f5965a5971fdc4280dbc6cc1c:69fa599a3a1dde52aa80aa866da3a6e6ea8ee72b-0.tsv b/combinations/mulled-v2-b8c00919e78e310f5965a5971fdc4280dbc6cc1c:69fa599a3a1dde52aa80aa866da3a6e6ea8ee72b-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+ca-certificates=2026.5.20,ncbi-datasets-cli=18.29.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-d0a31f0595153d696783e255901e79d6f9e26a7b:c8f7d79f3e92596dfadf13f26748e38689a161fc-0.tsv b/combinations/mulled-v2-d0a31f0595153d696783e255901e79d6f9e26a7b:c8f7d79f3e92596dfadf13f26748e38689a161fc-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+panaroo=1.7.0,prank=251117,clustalo=1.2.4	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-d3567f5619929c65634ae5e58d309a2d5e1103f3:c22039c624d7cd1cae90ff423f1a55aa64425b71-0.tsv b/combinations/mulled-v2-d3567f5619929c65634ae5e58d309a2d5e1103f3:c22039c624d7cd1cae90ff423f1a55aa64425b71-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+perl-math-cdf=0.1,grep=3.12,ensembl-vep=116.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-d54db66225e440bcb8adb009ef22104e7e995780:c598c272ba99133e497d18481be95815c6931928-0.tsv b/combinations/mulled-v2-d54db66225e440bcb8adb009ef22104e7e995780:c598c272ba99133e497d18481be95815c6931928-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-ggplot2=4.0.2,r-base=4.5.2,r-vcfr=1.15.0,r-adegenet=2.1.11,r-dplyr=1.2.1,r-ade4=1.7_23	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-e75e7f2714ed79255bc7878de63984ccb8b59ee8:743e1f460257f81187b7054b36ea18516e337441-0.tsv b/combinations/mulled-v2-e75e7f2714ed79255bc7878de63984ccb8b59ee8:743e1f460257f81187b7054b36ea18516e337441-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+python=3.6,raxml=8.2.13	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/nanoplot:1.47.0-0.tsv b/combinations/nanoplot:1.47.0-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+nanoplot=1.47.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/r-raceid:0.4.1-0.tsv b/combinations/r-raceid:0.4.1-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-raceid=0.4.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/vadersentiment:3.3.2-0.tsv b/combinations/vadersentiment:3.3.2-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+vadersentiment=3.3.2	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/xtb:6.7.1-0.tsv b/combinations/xtb:6.7.1-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+xtb=6.7.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0

Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+falco=1.3.1 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+gwtc_analysis=0.4.2 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+openai=2.41.1,pyyaml=6.0.3,python=3.12 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+openai=2.41.0,pyyaml=6.0.3,python=3.12 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+ncbi-amrfinderplus=4.2.7,pandas=2.3.3,python=3.11.14 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+mlst=2.33.1,staramr=0.12.3 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+pyyaml=6.0.3,openpyxl=3.1.5,aoptk=0.5.0 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+pandas=3.0.3,numpy=2.4.6 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+ucsc-bedgraphtobigwig=482,pytrf=1.5.0,python=3.12.3,pyfastx=2.3.1 quay.io/bioconda/base-glibc-busybox-bash:latest 0`