Rename and relocate demo packages to sc.fiji.ome.zarr.examples for better organization.

stefanhahmann · stefanhahmann · commit a93a195710a5 · 2026-06-11T15:58:40.000+02:00
diff --git a/src/test/java/sc/fiji/ome/zarr/examples/demo/BdvHandleServiceDemo.java b/src/test/java/sc/fiji/ome/zarr/examples/demo/BdvHandleServiceDemo.java
@@ -6,13 +6,13 @@
  * %%
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
- * 
+ *
  * 1. Redistributions of source code must retain the above copyright notice,
  *    this list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
- * 
+ *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -26,7 +26,7 @@
  * POSSIBILITY OF SUCH DAMAGE.
  * #L%
  */
-package sc.fiji.ome.zarr.util;
+package sc.fiji.ome.zarr.examples.demo;
 
 import net.imagej.ImageJ;
 import net.imglib2.img.Img;
@@ -35,6 +35,9 @@
 
 import java.util.Random;
 
+import sc.fiji.ome.zarr.util.BdvHandleService;
+
+@SuppressWarnings( "all" )
 public class BdvHandleServiceDemo
 {
 	public static void main( String[] args )
diff --git a/src/test/java/sc/fiji/ome/zarr/examples/demo/DnDActionChooserDemo.java b/src/test/java/sc/fiji/ome/zarr/examples/demo/DnDActionChooserDemo.java
@@ -6,13 +6,13 @@
  * %%
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
- * 
+ *
  * 1. Redistributions of source code must retain the above copyright notice,
  *    this list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
- * 
+ *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -26,12 +26,15 @@
  * POSSIBILITY OF SUCH DAMAGE.
  * #L%
  */
-package sc.fiji.ome.zarr.ui;
+package sc.fiji.ome.zarr.examples.demo;
 
 import javax.swing.*;
 import java.awt.event.ActionEvent;
 import java.awt.event.KeyEvent;
 
+import sc.fiji.ome.zarr.ui.DnDActionChooser;
+
+@SuppressWarnings( "all" )
 public class DnDActionChooserDemo
 {
 
diff --git a/src/test/java/sc/fiji/ome/zarr/examples/demo/MultiscaleImageDemo.java b/src/test/java/sc/fiji/ome/zarr/examples/demo/MultiscaleImageDemo.java
@@ -6,13 +6,13 @@
  * %%
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
- * 
+ *
  * 1. Redistributions of source code must retain the above copyright notice,
  *    this list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
- * 
+ *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -26,14 +26,14 @@
  * POSSIBILITY OF SUCH DAMAGE.
  * #L%
  */
-package sc.fiji.ome.zarr.pyramid.demo;
+package sc.fiji.ome.zarr.examples.demo;
 
 import java.nio.file.Paths;
 
 import net.imagej.ImageJ;
 
 import sc.fiji.ome.zarr.plugins.OpenInBDVCommand;
-import sc.fiji.ome.zarr.pyramid.legacy.MultiscaleImage;
+import sc.fiji.ome.zarr.examples.legacy.MultiscaleImage;
 import sc.fiji.ome.zarr.pyramid.Pyramidal5DImageDataImpl;
 import sc.fiji.ome.zarr.pyramid.PyramidalDataset;
 
diff --git a/src/test/java/sc/fiji/ome/zarr/examples/demo/N5ReaderDemo.java b/src/test/java/sc/fiji/ome/zarr/examples/demo/N5ReaderDemo.java
@@ -6,13 +6,13 @@
  * %%
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
- * 
+ *
  * 1. Redistributions of source code must retain the above copyright notice,
  *    this list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
- * 
+ *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -26,7 +26,7 @@
  * POSSIBILITY OF SUCH DAMAGE.
  * #L%
  */
-package sc.fiji.ome.zarr.pyramid.demo;
+package sc.fiji.ome.zarr.examples.demo;
 
 import org.janelia.saalfeldlab.n5.N5Reader;
 import org.janelia.saalfeldlab.n5.universe.N5DatasetDiscoverer;
diff --git a/src/test/java/sc/fiji/ome/zarr/examples/demo/OmeroMetadataDemo.java b/src/test/java/sc/fiji/ome/zarr/examples/demo/OmeroMetadataDemo.java
@@ -6,13 +6,13 @@
  * %%
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
- * 
+ *
  * 1. Redistributions of source code must retain the above copyright notice,
  *    this list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
- * 
+ *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -26,7 +26,7 @@
  * POSSIBILITY OF SUCH DAMAGE.
  * #L%
  */
-package sc.fiji.ome.zarr.pyramid.demo;
+package sc.fiji.ome.zarr.examples.demo;
 
 import java.net.URI;
 
@@ -40,7 +40,7 @@
  * {@link Pyramidal5DImageData} factory methods and printing the OMERO metadata.
  * Dataset: IDR idr0033A BR00109990_C2
  * URI: <a href="https://livingobjects.ebi.ac.uk/idr/zarr/v0.5/idr0033A/BR00109990_C2.zarr/0">https://livingobjects.ebi.ac.uk/idr/zarr/v0.5/idr0033A/BR00109990_C2.zarr/0</a>
- * Run with: mvn exec:java -Dexec.mainClass=sc.fiji.ome.zarr.pyramid.demo.OmeroMetadataDemo
+ * Run with: mvn exec:java -Dexec.mainClass=sc.fiji.ome.zarr.examples.demo.OmeroMetadataDemo
  */
 public class OmeroMetadataDemo
 {
diff --git a/src/test/java/sc/fiji/ome/zarr/examples/demo/Pyramidal5DImageDataDemo.java b/src/test/java/sc/fiji/ome/zarr/examples/demo/Pyramidal5DImageDataDemo.java
@@ -6,13 +6,13 @@
  * %%
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
- * 
+ *
  * 1. Redistributions of source code must retain the above copyright notice,
  *    this list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
- * 
+ *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -26,7 +26,7 @@
  * POSSIBILITY OF SUCH DAMAGE.
  * #L%
  */
-package sc.fiji.ome.zarr.pyramid.demo;
+package sc.fiji.ome.zarr.examples.demo;
 
 import java.nio.file.Paths;
 
diff --git a/src/test/java/sc/fiji/ome/zarr/examples/demo/ScriptUtilsDemo.java b/src/test/java/sc/fiji/ome/zarr/examples/demo/ScriptUtilsDemo.java
@@ -6,13 +6,13 @@
  * %%
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
- * 
+ *
  * 1. Redistributions of source code must retain the above copyright notice,
  *    this list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
- * 
+ *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -26,23 +26,27 @@
  * POSSIBILITY OF SUCH DAMAGE.
  * #L%
  */
-package sc.fiji.ome.zarr.util;
+package sc.fiji.ome.zarr.examples.demo;
 
 import net.imagej.ImageJ;
 
 import ij.IJ;
+import sc.fiji.ome.zarr.util.ScriptUtils;
 
 import java.net.URI;
 import java.nio.file.Paths;
 
-public class ScriptUtilsDemo {
-	public static void main(String[] args) {
+public class ScriptUtilsDemo
+{
+	public static void main( String[] args )
+	{
 		ImageJ ij = new ImageJ();
 		ij.ui().showUI();
 
-		final URI inputUri = Paths.get( "/home/ulman/Documents/talks/CEITEC/2025_11_ZarrSymposium_Zurich/data/MitoEM_fixedRes.zarr/MitoEM_fixedRes" ).toUri();
-		System.out.println("\nLet's run the script... on URI param: "+inputUri);
+		final URI inputUri = Paths
+				.get( "/home/ulman/Documents/talks/CEITEC/2025_11_ZarrSymposium_Zurich/data/MitoEM_fixedRes.zarr/MitoEM_fixedRes" ).toUri();
+		System.out.println( "\nLet's run the script... on URI param: " + inputUri );
 		ScriptUtils.executePresetScript( ij.context(), inputUri, IJ::error );
-		System.out.println("Done.");
+		System.out.println( "Done." );
 	}
 }
diff --git a/src/test/java/sc/fiji/ome/zarr/examples/demo/StartN5ImporterDialog.java b/src/test/java/sc/fiji/ome/zarr/examples/demo/StartN5ImporterDialog.java
@@ -6,13 +6,13 @@
  * %%
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
- * 
+ *
  * 1. Redistributions of source code must retain the above copyright notice,
  *    this list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
- * 
+ *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -26,14 +26,15 @@
  * POSSIBILITY OF SUCH DAMAGE.
  * #L%
  */
-package sc.fiji.ome.zarr.ui;
+package sc.fiji.ome.zarr.examples.demo;
 
 import org.janelia.saalfeldlab.n5.ij.N5Importer;
 
 import java.nio.file.Path;
 import java.nio.file.Paths;
 import java.util.Collections;
 
+@SuppressWarnings( "all" )
 public class StartN5ImporterDialog
 {
 	public static void main( String[] args )
diff --git a/src/test/java/sc/fiji/ome/zarr/examples/legacy/MultiscaleImage.java b/src/test/java/sc/fiji/ome/zarr/examples/legacy/MultiscaleImage.java
@@ -6,13 +6,13 @@
  * %%
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
- * 
+ *
  * 1. Redistributions of source code must retain the above copyright notice,
  *    this list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
- * 
+ *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -26,11 +26,11 @@
  * POSSIBILITY OF SUCH DAMAGE.
  * #L%
  */
-package sc.fiji.ome.zarr.pyramid.legacy;
+package sc.fiji.ome.zarr.examples.legacy;
 
 import sc.fiji.ome.zarr.pyramid.exceptions.NotAMultiscaleImageException;
 
-import static sc.fiji.ome.zarr.pyramid.legacy.Multiscales.MULTI_SCALE_KEY;
+import static sc.fiji.ome.zarr.examples.legacy.Multiscales.MULTI_SCALE_KEY;
 
 import net.imglib2.RandomAccessibleInterval;
 import net.imglib2.Volatile;
diff --git a/src/test/java/sc/fiji/ome/zarr/examples/legacy/Multiscales.java b/src/test/java/sc/fiji/ome/zarr/examples/legacy/Multiscales.java
@@ -6,13 +6,13 @@
  * %%
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
- * 
+ *
  * 1. Redistributions of source code must retain the above copyright notice,
  *    this list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
- * 
+ *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -26,7 +26,7 @@
  * POSSIBILITY OF SUCH DAMAGE.
  * #L%
  */
-package sc.fiji.ome.zarr.pyramid.legacy;
+package sc.fiji.ome.zarr.examples.legacy;
 
 import java.util.Collections;
 import java.util.List;
diff --git a/src/test/java/sc/fiji/ome/zarr/examples/legacy/OMEZarrData.java b/src/test/java/sc/fiji/ome/zarr/examples/legacy/OMEZarrData.java
@@ -6,13 +6,13 @@
  * %%
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
- * 
+ *
  * 1. Redistributions of source code must retain the above copyright notice,
  *    this list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
- * 
+ *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -26,7 +26,7 @@
  * POSSIBILITY OF SUCH DAMAGE.
  * #L%
  */
-package sc.fiji.ome.zarr.pyramid.legacy;
+package sc.fiji.ome.zarr.examples.legacy;
 
 import java.nio.file.Paths;
 
