Reference Genomes

#What genomes are to choose from? Currently SEQuoia Express toolkit supports the following model organisms:

• hg38 - Human genome
• mm10 - Mouse genome
• rnor6 - Rat genome
• tair10 - Arabidopsis genome
• sacCer3 - Yeast genome
• dm6 - Fly genome
• danRer11 - Zebrafish genome
• ce11 - Worm genome

How To:

Download the set up genomes

1. Navigate to our Dropbox
2. Select the reference genome you would like to choose (for all the file neede use the tar.gz files), when hovering over the file name a box that says "Copy link" will appear in the row.
3. Click that button to get the link (it will get copied to your clipboard)
4. Create a folder / directory for the genomes mkdir genomes | cd genomes
5. Follow the readme instructions wget -O my_genome.tar.gz dropbox/link/here/my_genome.tar.gzdl=0 this download the genome files (compressed) to the current directory. Where my_genome is the name of the genome you wish to use.
6. Uncompress using tar xvzf my_genome.tar.gz this will create the directory structure the toolkit is expecting to be able to use for your samples

FAQ / Issues

• do not name the genomes folder after the genome you want to use for examples ~/mm10/mm10 as your base genome file will break the report.