Merge pull request #46 from smped/devel

seandavi · web-flow · commit 92586fcf8818 · 2026-05-02T13:35:09.000-04:00
Update R package installation command in Dockerfile
diff --git a/Dockerfile b/Dockerfile
@@ -6,4 +6,4 @@ COPY --chown=rstudio:rstudio . /home/rstudio/
 
 RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask=FALSE)"
 
-RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies=TRUE, build_vignettes=TRUE, repos = BiocManager::repositories())"
+RUN Rscript -e "options(repos = BiocManager::repositories()); devtools::install('.', dependencies=TRUE, build_vignettes=TRUE)"

Original file line number	Diff line number	Diff line change
`@@ -6,4 +6,4 @@ COPY --chown=rstudio:rstudio . /home/rstudio/`
`6`	`6`
`7`	`7`	`RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask=FALSE)"`
`8`	`8`
`9`		`-RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies=TRUE, build_vignettes=TRUE, repos = BiocManager::repositories())"`
	`9`	`+RUN Rscript -e "options(repos = BiocManager::repositories()); devtools::install('.', dependencies=TRUE, build_vignettes=TRUE)"`