biocUniTools/.github/workflows/quarto.yml at devel · Bioconductor/biocUniTools · GitHub

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on:
  push:
    branches: [devel]
  pull_request:
    branches: [devel]
  schedule:
    - cron: "30 16 * * *" # 2:30pm ET
  workflow_dispatch:

name: quarto

jobs:
  quarto:
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    steps:
      - uses: actions/checkout@v4

      - uses: quarto-dev/quarto-actions/setup@v2

      - uses: r-lib/actions/setup-r@v2

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: |
            any::remotes
            local::.
          needs: website

      - name: Install package
        run: BiocManager::install("Bioconductor/biocUniTools")
        shell: Rscript {0}

      - name: Render
        run: quarto render

      - name: Deploy to GitHub pages
        uses: JamesIves/github-pages-deploy-action@v4
        with:
          clean: false
          branch: gh-pages
          folder: docs