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Subtype Data

Status: Open.

#660 In BioinformaticsFMRP/TCGAbiolinks;

· nttg8100 opened on May 11, 2026

Conflicts of GDCquery() and GDCpreapre() on the arguments of platform when downloading Illumina Methylation Epic chip data.

Status: Open.

#659 In BioinformaticsFMRP/TCGAbiolinks;

· LeonLiu-ZL opened on Apr 24, 2026

GDCprepare Issue

Status: Open.

#657 In BioinformaticsFMRP/TCGAbiolinks;

· ZaraForbrigger opened on Feb 19, 2026

Error in if (ret == 1) break : argument is of length zero when GDCdownload( )

Status: Open.

#656 In BioinformaticsFMRP/TCGAbiolinks;

· wanganlin00 opened on Dec 17, 2025

Error in GDCprepare for TARGET-AML dataset when building SummarizedExperiment

Status: Open.

#655 In BioinformaticsFMRP/TCGAbiolinks;

· RFillinger opened on Dec 15, 2025

Manually patched GDCquery_clinic bug -- incorrect sample set downloaded for TARGET-NBL

Status: Open.

#654 In BioinformaticsFMRP/TCGAbiolinks;

· danmonyak opened on Dec 10, 2025

Loading clinical data TCGA-COAD

Status: Open.

#653 In BioinformaticsFMRP/TCGAbiolinks;

· AnneMarchalot opened on Nov 18, 2025

Issues connecting to GDC API

Status: Open.

#652 In BioinformaticsFMRP/TCGAbiolinks;

· atn1004 opened on Nov 7, 2025

When downloading the clinical data something went wrong

Status: Open.

#651 In BioinformaticsFMRP/TCGAbiolinks;

· xiaofengyyy opened on Aug 29, 2025

Add clinical information to samples：Column disease_response doesn't exist.

Status: Open.

#649 In BioinformaticsFMRP/TCGAbiolinks;

· smallboy-code opened on Aug 19, 2025

Regarding the download of slide pathological staining data from TCGA using TCGAbiolinks

Status: Open.

#648 In BioinformaticsFMRP/TCGAbiolinks;

· PanSX-Dr opened on Jun 7, 2025

Error parsing XML files

Status: Open.

#647 In BioinformaticsFMRP/TCGAbiolinks;

· shaniAmare opened on May 18, 2025