Problems in testing large genomes

[unavailable-2374]

Hi Developer

Look4ltrs runs for more than 10h without termination when run on
rice(NIP T2T https://www.cell.com/molecular-plant/pdfExtended/S1674-2052(23)00219-8)
maize(https://www.nature.com/articles/s41588-023-01419-6#data-availability)
human(T2T-CHM13v2.0)
log files are active

"
Found a nest at level 47
Found a nest at level 47
Found a nest at level 46
"

here is the command : look4ltrs --fasta genome/ --out ./ --parallel 30

Warm regards
Shuo

[unavailable-2374]

I ran it multiple times and found that it would get stuck in one of the same position, even when I ran it on a chromosome alone.

[unavailable-2374]

hello is anybody there?
I masked some part of genome it works, but not on human genome.
Look4LTRs still stucks on "Found a nest at level XX", and looks like it can do this endless.

[unavailable-2374]

Hi Developer

Can this bug be fixed? If it can, I will choose to continue using Look4LTRs in my project, if not, I will have to change my method.

Please contact me if you can.

Best

[xiekunwhy]

@unavailable-2374 , Have you solved this problem? I meet the same situation.

[hani-girgis]

Hi.

We are currently studying this issue and will get back to you as soon as we can.

Best regards.

[unavailable-2374]

Hi.

We are currently studying this issue and will get back to you as soon as we can.

Best regards.
Hi.

Thanks a lot, very much looking forward to your reply.

Best,
Cyrus

[xiekunwhy]

Hi.

We are currently studying this issue and will get back to you as soon as we can.

Best regards.

waiting online.

[xiekunwhy]

any progress?

[xiekunwhy]

this problem happen very often, so I think that Look4ltrs is not usable before solving this problem.