Fixing bug in new version FASTA file processing

mohamadi · mohamadi · commit 8ebca4a6e8f4 · 2020-01-27T13:06:35.000-08:00
diff --git a/ntcard.cpp b/ntcard.cpp
@@ -200,9 +200,9 @@ getEfa(std::ifstream& in, const std::vector<unsigned>& kList, uint16_t* t_Counte
 			good = static_cast<bool>(getline(in, seq));
 		}
 		if (opt::gap == 0) {
-			ntRead(seq, kList, t_Counter, totKmer);
+			ntRead(line, kList, t_Counter, totKmer);
 		} else {
-			stRead(seq, kList, t_Counter, totKmer);
+			stRead(line, kList, t_Counter, totKmer);
 		}
 	}
 }

Original file line number	Diff line number	Diff line change
`@@ -200,9 +200,9 @@ getEfa(std::ifstream& in, const std::vector<unsigned>& kList, uint16_t* t_Counte`
`200`	`200`	`good = static_cast<bool>(getline(in, seq));`
`201`	`201`	`}`
`202`	`202`	`if (opt::gap == 0) {`
`203`		`- ntRead(seq, kList, t_Counter, totKmer);`
	`203`	`+ ntRead(line, kList, t_Counter, totKmer);`
`204`	`204`	`} else {`
`205`		`- stRead(seq, kList, t_Counter, totKmer);`
	`205`	`+ stRead(line, kList, t_Counter, totKmer);`
`206`	`206`	`}`
`207`	`207`	`}`
`208`	`208`	`}`