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ci: enable full Zephyr Twister job, execute benchmarks, apply specsmith migrations
- Enable Zephyr CI job (was commented out): west init/update with narrow shallow clone, native_sim platform, west workspace cached by west.yml hash - Flip benchmarks from build_only to execute; harness_config regex gates pass/fail on final log line so timing numbers are captured as artifacts - Apply specsmith migrations v001-v006: governance YAMLs, compliance scaffold, ESDB WAL migration, agent-tools.json, session protocol - Gitignore .chronomemory/ and .specsmith/*.bak (machine-local state) Co-Authored-By: Oz <oz-agent@warp.dev>
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‎.github/workflows/ci.yml‎

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done
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exit $missing
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# Zephyr/Twister tests require a full Zephyr SDK setup.
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# Uncomment when CI has west + Zephyr SDK available.
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# zephyr:
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# name: Zephyr Twister Tests
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# runs-on: ubuntu-latest
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# steps:
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# - uses: actions/checkout@v4
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# - name: Install west
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# run: pip install west
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# - name: Init workspace
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# run: west init -l .
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# - name: Update
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# run: west update
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# - name: Twister tests
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# run: west twister -T tests
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# - name: Twister samples
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# run: west twister -T samples
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zephyr:
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name: Zephyr Twister Tests
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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with:
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# west.yml declares self.path: app — match it so west module
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# resolution works correctly alongside modules/lib/arbiter/
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path: app
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- uses: actions/setup-python@v5
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with:
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python-version: "3.11"
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- name: Install west
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run: pip install west
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# Cache the Zephyr tree and west state keyed on west.yml.
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# All three paths are saved/restored together so a partial
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# hit cannot leave the workspace in an inconsistent state.
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- name: Cache west workspace
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id: cache-west
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uses: actions/cache@v4
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with:
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path: |
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zephyr
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modules
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.west
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key: west-${{ hashFiles('app/west.yml') }}
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restore-keys: west-
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# Only run init+update on a cache miss; .west/config is
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# restored from cache and is sufficient for subsequent steps.
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- name: West init
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if: steps.cache-west.outputs.cache-hit != 'true'
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run: west init -l app
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# --narrow: only fetch projects in our top-level manifest
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# (zephyr + arbiter), skipping Zephyr's full HAL set.
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# -o=--depth=1: shallow clone to keep the runner fast.
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# native_sim needs only the Zephyr core tree, no HALs.
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- name: West update
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if: steps.cache-west.outputs.cache-hit != 'true'
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run: west update --narrow -o=--depth=1
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- name: Install Zephyr Python requirements
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run: |
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pip install -r zephyr/scripts/requirements-base.txt
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pip install -r zephyr/scripts/requirements-build-test.txt
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# Unit tests run as native executables on native_sim.
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- name: Twister — unit tests
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run: |
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west twister \
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-T app/tests/unit \
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-p native_sim \
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--inline-logs -v \
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--output-dir twister-out/unit
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# Benchmarks execute on native_sim; Twister captures timing output
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# as an artifact. pass/fail is gated on the final log line regex.
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- name: Twister — benchmarks
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run: |
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west twister \
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-T app/tests/benchmarks \
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-p native_sim \
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--inline-logs -v \
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--output-dir twister-out/benchmarks
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# All 17 samples are build_only; CI proves they compile clean.
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- name: Twister — samples
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run: |
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west twister \
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-T app/samples \
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-p native_sim \
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--inline-logs -v \
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--output-dir twister-out/samples
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- name: Upload Twister results
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if: always()
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uses: actions/upload-artifact@v4
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with:
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name: twister-results
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path: twister-out/

‎.gitignore‎

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htmlcov/
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.coverage
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coverage.xml
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# specsmith machine-local state
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.chronomemory/
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.specsmith/*.bak

‎.specsmith/agent-tools.json‎

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{
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"schema_version": 1,
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"primary_governance_command": "specsmith_run",
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"slash_prefix": "/specsmith",
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"verb_shortcuts": [
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"audit",
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"commit",
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"doctor",
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"load",
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"pull",
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"push",
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"run",
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"save",
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"status",
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"sync",
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"validate",
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"watch"
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],
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"description": "Use specsmith_run() or /specsmith <args> in the Nexus REPL for all governance operations (save, load, push, pull, audit, status, \u2026). REQ-SM-001: agents must not invoke the specsmith binary directly via run_shell when specsmith_run is available."
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}

‎.specsmith/compliance/README.md‎

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# .specsmith/compliance/
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Project-specific compliance overlays for AI regulation.
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## Structure
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Each file overrides the built-in regulation status for this project:
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eu-ai-act.yaml — EU AI Act (Regulation 2024/1689)
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nist-rmf.yaml — NIST AI RMF 1.0 + AI 600-1
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omb-m-24-10.yaml — OMB M-24-10
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colorado-sb24-205.yaml — Colorado AI Act (effective Feb 2026)
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texas-hb1709.yaml — Texas AI Transparency Act
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etc.
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## Usage
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# Check compliance for all regulations
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specsmith compliance check
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# Generate compliance report
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specsmith compliance report --format html --output compliance-report.html
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# Store results to ESDB audit trail
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specsmith compliance audit
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See: https://specsmith.readthedocs.io/en/stable/compliance/

‎.specsmith/compliance/eu-ai-act.yaml‎

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# EU AI Act (Regulation 2024/1689) — project overlay
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#
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# This file allows overriding compliance status for this specific project.
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# Leave fields empty to use specsmith's auto-detection.
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#
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# regulation_id: eu-ai-act
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# project notes:
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risk_tier: minimal_risk # prohibited | high_risk | gpai | minimal_risk
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is_gpai: false # true if this is a General Purpose AI model
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gpai_systemic_risk: false # true if > 10^25 FLOP training compute
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# Override specific article status (auto-detected if absent):
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# article_overrides:
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# Art.9:
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# status: compliant
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# notes: "Risk management system via specsmith AEE pipeline"

‎.specsmith/governance/context-budget.yaml‎

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# Generated by specsmith migrate m001
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# Edit this file; original MD kept as view.
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content: '# Context Budget
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Keep governance files small. Lazy-load per task.
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'
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generated_by: specsmith migrate (m001)
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kind: context-budget
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source_md: docs/governance/CONTEXT-BUDGET.md

‎.specsmith/governance/drift-metrics.yaml‎

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# Generated by specsmith migrate m001
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# Edit this file; original MD kept as view.
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content: '# Drift Metrics
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Use `specsmith audit` to check governance health.
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'
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generated_by: specsmith migrate (m001)
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kind: drift-metrics
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source_md: docs/governance/DRIFT-METRICS.md

‎.specsmith/governance/lifecycle.yaml‎

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# Generated by specsmith migrate m001
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# Edit this file; original MD kept as view.
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content: '# Project Lifecycle
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See `specsmith phase show` for current phase readiness.
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See `specsmith phase list` for the full AEE lifecycle.
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'
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kind: lifecycle
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source_md: docs/governance/LIFECYCLE.md

‎.specsmith/governance/roles.yaml‎

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# Generated by specsmith migrate m001
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# Edit this file; original MD kept as view.
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content: '# Roles
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- **Human**: Approves proposals
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- **Agent**: Proposes and executes
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'
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generated_by: specsmith migrate (m001)
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kind: roles
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source_md: docs/governance/ROLES.md

‎.specsmith/governance/rules.yaml‎

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# specsmith governance rules — structured YAML
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# Generated by: specsmith migrate run --version 1
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# Source: docs/governance/RULES.md
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# Edit this file; original MD kept as read-only view.
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kind: rules
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source_md: docs/governance/RULES.md
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generated_by: specsmith migrate (m001)
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rules:
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- note: Could not parse rules — see source MD

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