diff --git a/backend/glossa_lab/api/research_loop.py b/backend/glossa_lab/api/research_loop.py index ba81b8b2..bb29c853 100644 --- a/backend/glossa_lab/api/research_loop.py +++ b/backend/glossa_lab/api/research_loop.py @@ -175,30 +175,39 @@ async def start_loop( async def event_stream(): """Run the loop in a thread via a queue, persist + stream per cycle.""" queue: asyncio.Queue[dict[str, Any] | None] = asyncio.Queue() + producer_error: list[Exception] = [] # capture worker thread errors def _producer(): """Runs in worker thread โ€” puts entries on the queue.""" try: for entry in loop.run(): queue.put_nowait(entry) + except Exception as exc: # noqa: BLE001 + producer_error.append(exc) finally: queue.put_nowait(None) # sentinel # Start the producer in a background thread task = asyncio.get_event_loop().run_in_executor(None, _producer) + import time as _time + t0 = _time.monotonic() cycles_done = 0 + last_experiment = "" + timed_out = False while True: # Wait for next entry (with timeout so we don't hang forever) try: entry = await asyncio.wait_for(queue.get(), timeout=120) except asyncio.TimeoutError: + timed_out = True break if entry is None: # producer finished break cycles_done += 1 + last_experiment = entry.get("experiment", last_experiment) yield f"data: {json.dumps(entry)}\n\n" # Persist state from async context (no thread issues) @@ -214,6 +223,26 @@ def _producer(): # Wait for producer thread to finish await task + elapsed = _time.monotonic() - t0 + + # If the loop failed or timed out, emit an error SSE event + if timed_out or producer_error: + reason = "timeout" if timed_out else str(producer_error[0]) + err_event = { + "type": "error", + "reason": reason, + "cycles_completed": cycles_done, + "last_experiment": last_experiment, + "elapsed_seconds": round(elapsed, 1), + } + yield f"data: {json.dumps(err_event)}\n\n" + if job_id and db: + try: + await db.update_job_status(job_id, "failed") + except Exception: # noqa: BLE001 + pass + return # skip synthesis on failure + # Final persist (before foundation check so history is durable) await _persist(loop) diff --git a/backend/scripts/cleanup_hypotheses.py b/backend/scripts/cleanup_hypotheses.py new file mode 100644 index 00000000..d48d5fde --- /dev/null +++ b/backend/scripts/cleanup_hypotheses.py @@ -0,0 +1,89 @@ +#!/usr/bin/env python3 +"""Delete 6 noise hypotheses from glossa.db. + +These are LLM-generated meta-action entries (e.g. "Plan chain", +"Create Hypothesis Chain") that pollute the hypothesis tracker. + +Usage: + python backend/scripts/cleanup_hypotheses.py [--db PATH] + +Defaults to backend/data/glossa.db relative to repo root. +""" +from __future__ import annotations + +import argparse +import sqlite3 +import sys +from pathlib import Path + +NOISE_PREFIXES = [ + "e6ab5842", # Plan chain + "b8d69b0b", # Create Hypothesis Chain + "0660e244", # Create Hypothesis for Dravidian + "4e25f46c", # Plan experiment chain for Indus + "bf24fa5e", # Propose experiment chain for Indus + "b1f04723", # Plan an experiment chain for astronomical +] + +DEFAULT_DB = Path(__file__).resolve().parents[1] / "data" / "glossa.db" + + +def main() -> int: + parser = argparse.ArgumentParser(description="Delete noise hypotheses") + parser.add_argument("--db", type=Path, default=DEFAULT_DB, + help="Path to glossa.db") + args = parser.parse_args() + + db_path: Path = args.db + if not db_path.exists(): + print(f"ERROR: database not found at {db_path}", file=sys.stderr) + return 1 + + conn = sqlite3.connect(str(db_path)) + conn.execute("PRAGMA journal_mode=WAL") + cur = conn.cursor() + + # Confirm rows exist before deleting + print("=== Pre-delete check ===") + found_ids: list[str] = [] + for prefix in NOISE_PREFIXES: + rows = cur.execute( + "SELECT id, substr(title, 1, 80) FROM hypotheses WHERE id LIKE ?", + (prefix + "%",), + ).fetchall() + for row in rows: + found_ids.append(row[0]) + print(f" FOUND: {row[0]} | {row[1]}") + if not rows: + print(f" NOT FOUND: {prefix}%") + + if not found_ids: + print("\nNo matching rows โ€” nothing to delete.") + conn.close() + return 0 + + # Delete + placeholders = ",".join("?" for _ in found_ids) + cur.execute(f"DELETE FROM hypotheses WHERE id IN ({placeholders})", found_ids) + deleted = cur.rowcount + conn.commit() + + # Verify + print(f"\n=== Deleted {deleted} row(s) ===") + for prefix in NOISE_PREFIXES: + remaining = cur.execute( + "SELECT COUNT(*) FROM hypotheses WHERE id LIKE ?", + (prefix + "%",), + ).fetchone()[0] + if remaining: + print(f" WARNING: {prefix}% still has {remaining} row(s)") + + total = cur.execute("SELECT COUNT(*) FROM hypotheses").fetchone()[0] + print(f"Total hypotheses remaining: {total}") + + conn.close() + return 0 + + +if __name__ == "__main__": + sys.exit(main()) diff --git a/frontend/dist/assets/index-BXsZCCru.js b/frontend/dist/assets/index-Du5xgn9c.js similarity index 51% rename from frontend/dist/assets/index-BXsZCCru.js rename to frontend/dist/assets/index-Du5xgn9c.js index c349e9f9..92b2560a 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Add at least one address below to start receiving emails."}):n.jsx("div",{style:{border:"1px solid #e5e7eb",borderRadius:6,overflow:"hidden"},children:l.map(le=>n.jsxs("div",{style:{display:"flex",alignItems:"center",gap:8,padding:"7px 12px",borderBottom:"1px solid #f1f5f9",background:le.active?"#fff":"#fafafa"},children:[n.jsx("span",{title:le.active?"Active":"Paused",style:{width:8,height:8,borderRadius:"50%",background:le.active?"#22c55e":"#cbd5e1",flexShrink:0}}),n.jsxs("div",{style:{flex:1,minWidth:0},children:[n.jsx("div",{style:{fontSize:13,fontWeight:500,color:"#111827",overflow:"hidden",textOverflow:"ellipsis",whiteSpace:"nowrap"},children:le.email}),le.label&&n.jsx("div",{style:{fontSize:11,color:"#6b7280",marginTop:1},children:le.label})]}),n.jsx("button",{onClick:()=>void _e(le),title:le.active?"Pause notifications":"Resume notifications",style:qf(le.active?"#f59e0b":"#22c55e"),children:le.active?"โธ":"โ–ถ"}),n.jsx("button",{onClick:()=>void Me(le),title:"Edit label",style:qf("#6b7280"),children:"โœŽ"}),n.jsx("button",{onClick:()=>void de(le),title:"Remove",style:qf("#dc2626"),children:"๐Ÿ—‘"})]},le.id))}),n.jsxs("div",{style:{display:"flex",gap:6,marginTop:8,flexWrap:"wrap"},children:[n.jsx("input",{value:w,onChange:le=>_(le.target.value),onKeyDown:le=>{le.key==="Enter"&&w.trim()&&ye()},placeholder:"recipient@example.com",style:{...Jn,flex:2,minWidth:200}}),n.jsx("input",{value:C,onChange:le=>T(le.target.value),onKeyDown:le=>{le.key==="Enter"&&w.trim()&&ye()},placeholder:"Label (optional, e.g. PI, lab)",style:{...Jn,flex:1,minWidth:140}}),n.jsx("button",{onClick:()=>void ye(),disabled:y||!w.trim(),style:{...Dk,cursor:y||!w.trim()?"not-allowed":"pointer",opacity:y||!w.trim()?.5:1},children:"+ Add"})]})]}),n.jsxs("details",{style:{marginTop:16},children:[n.jsxs("summary",{style:{cursor:"pointer",fontWeight:600,fontSize:13,color:"#374151"},children:["๐Ÿ“œ Recent send log (",d.length,")"]}),n.jsx("div",{style:{marginTop:8,maxHeight:220,overflowY:"auto",border:"1px solid #e5e7eb",borderRadius:6},children:d.length===0?n.jsx("div",{style:{fontSize:12,color:"#9ca3af",padding:"10px 14px",fontStyle:"italic"},children:"No emails sent yet."}):d.map(le=>{const Ie=le.status==="sent"?"#22c55e":le.status==="failed"?"#dc2626":"#9ca3af";return n.jsxs("div",{style:{display:"flex",gap:8,padding:"6px 12px",borderBottom:"1px solid #f1f5f9",alignItems:"center"},children:[n.jsx("span",{style:{fontSize:9,fontWeight:700,color:Ie,background:Ie+"20",padding:"1px 6px",borderRadius:4,textTransform:"uppercase",flexShrink:0},children:le.status}),n.jsxs("div",{style:{flex:1,minWidth:0},children:[n.jsx("div",{style:{fontSize:12,color:"#111827",overflow:"hidden",textOverflow:"ellipsis",whiteSpace:"nowrap"},children:le.subject}),n.jsxs("div",{style:{fontSize:10,color:"#6b7280",marginTop:1},children:["to ",le.recipient," ยท ",le.kind," ยท ",Rk(le.sent_at),le.item_count>0&&` ยท ${le.item_count} items`]}),le.error&&n.jsx("div",{style:{fontSize:10,color:"#dc2626",marginTop:1},children:le.error})]})]},le.id)})})]})]})}function qf(t){return{border:"1px solid "+t+"40",borderRadius:4,background:"none",color:t,cursor:"pointer",fontSize:11,padding:"2px 7px"}}function Rk(t){if(!t)return"";const o=new Date(t);return Number.isNaN(o.getTime())?t:o.toLocaleString()}const Ak={marginBottom:"2rem",padding:"1.25rem",border:"1px solid #e5e7eb",borderRadius:8},Mk={margin:"0 0 0.5rem 0",fontSize:15,fontWeight:600,color:"#111827"},cy={margin:0,fontSize:12,color:"#6b7280",lineHeight:1.5},Gf={fontSize:11,fontWeight:700,color:"#7c3aed",textTransform:"uppercase",letterSpacing:.5,marginBottom:6},Jn={padding:"6px 10px",border:"1px solid #d1d5db",borderRadius:5,fontSize:13,width:"100%",boxSizing:"border-box",outline:"none"},hc={padding:"5px 12px",border:"1px solid #2563eb",borderRadius:6,background:"#2563eb",color:"#fff",fontSize:12,fontWeight:600,cursor:"pointer"},Dk={padding:"6px 16px",border:"none",borderRadius:5,background:"#7c3aed",color:"#fff",fontSize:12,fontWeight:600,cursor:"pointer"},dy={padding:"5px 9px",border:"1px solid #d1d5db",borderRadius:5,background:"#fff",cursor:"pointer",fontSize:12},pa={padding:"5px 12px",border:"1px solid #c7d2fe",borderRadius:6,background:"#fff",color:"#4338ca",fontSize:12,fontWeight:600,cursor:"pointer"},Lk=[{id:"news_api_key",label:"NewsAPI",href:"https://newsapi.org/account",hint:"Global news articles. Free tier: 100 req/day."},{id:"serp_api_key",label:"SerpAPI",href:"https://serpapi.com/manage-api-key",hint:"Google search results. Free tier: 100 searches/month."},{id:"brave_search_api_key",label:"Brave Search",href:"https://api-dashboard.search.brave.com/",hint:"Web search. Free tier: 2,000 queries/month."},{id:"uspto_api_key",label:"USPTO (ODP)",href:"https://developer.uspto.gov/",hint:"US patent search via the Open Data Portal. Free key."}],Nk=[{id:"semantic_scholar_api_key",label:"Semantic Scholar",href:"https://www.semanticscholar.org/product/api#api-key-form",hint:"Removes the 100 req/5 min cap. Strongly recommended."},{id:"openalex_email",label:"OpenAlex (email)",href:"https://docs.openalex.org/how-to-use-the-api/rate-limits-and-authentication",hint:"Enter your email for priority access. 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Configure the sources, toggle the schedule, and trigger manual runs from this panel."}),n.jsxs("div",{style:{marginTop:10,padding:"10px 14px",borderRadius:7,border:`1px solid ${p!=null&&p.running?"#86efac":"#fcd34d"}`,background:p!=null&&p.running?"#f0fdf4":"#fffbeb",display:"flex",alignItems:"center",gap:10,flexWrap:"wrap"},children:[n.jsx("span",{style:{fontSize:16},children:p!=null&&p.running?"โฑ๏ธ":"๐Ÿ’ค"}),n.jsxs("div",{style:{flex:1,minWidth:220},children:[n.jsx("div",{style:{fontSize:13,fontWeight:600,color:p!=null&&p.running?"#15803d":"#92400e"},children:p!=null&&p.running?"Auto-discovery running":"Auto-discovery off"}),n.jsxs("div",{style:{fontSize:11,color:"#6b7280",marginTop:2},children:[I,"/",X," sources configured",p?` ยท interval ${Math.round(p.interval_seconds/3600)}h`:"",p!=null&&p.enabled?" ยท persisted":p?" ยท not persisted":"",d.length>0?` ยท ${d.length} topic(s)`:""]})]}),n.jsx("div",{onClick:()=>!C&&void q(!(p!=null&&p.running)),title:p!=null&&p.running?"Stop scheduler":"Start scheduler + persist",style:{width:44,height:24,borderRadius:12,cursor:C?"not-allowed":"pointer",flexShrink:0,position:"relative",background:p!=null&&p.running?"#22c55e":"#d1d5db",opacity:C?.5:1,transition:"background 0.2s"},children:n.jsx("div",{style:{position:"absolute",top:3,left:p!=null&&p.running?23:3,width:18,height:18,borderRadius:"50%",background:"#fff",boxShadow:"0 1px 3px rgba(0,0,0,0.25)",transition:"left 0.2s"}})})]}),n.jsxs("div",{style:{marginTop:14},children:[n.jsx("div",{style:gc,children:"1 ยท Manual run"}),n.jsx("p",{style:{...ha,marginTop:4},children:"Trigger a fetch (pulls new items from every configured source for every topic) and/or a mine (LLM-classifies un-mined items in the queue). 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    `+We+" + -
    +
    diff --git a/frontend/src/components/DashboardView.tsx b/frontend/src/components/DashboardView.tsx index 9b5bfaee..bf8f3c05 100644 --- a/frontend/src/components/DashboardView.tsx +++ b/frontend/src/components/DashboardView.tsx @@ -53,6 +53,35 @@ import { ResearchLoopPanel } from "./ResearchLoopPanel"; // Bump version to invalidate stale caches that contain hallucinated hex-hash // experiment IDs from before the backend validation was deployed. const INSIGHT_LS_KEY = "glossa_dashboard_insight_v2"; + +// โ”€โ”€ Action result persistence โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€ +// Persists the last N action results in localStorage so they survive page +// reloads. Max 50 entries, trimmed FIFO. +const ACTION_RESULTS_LS_KEY = "glossa_action_results_v1"; +interface ActionResultEntry { + key: string; + action_type: string; + label: string; + outcome: "success" | "error" | "warn"; + timestamp: number; + detail?: string; +} +function _loadActionResults(): ActionResultEntry[] { + try { + const raw = localStorage.getItem(ACTION_RESULTS_LS_KEY); + if (!raw) return []; + const arr = JSON.parse(raw); + return Array.isArray(arr) ? arr : []; + } catch { return []; } +} +function _saveActionResult(entry: ActionResultEntry): void { + try { + const arr = _loadActionResults(); + arr.unshift(entry); + if (arr.length > 50) arr.length = 50; + localStorage.setItem(ACTION_RESULTS_LS_KEY, JSON.stringify(arr)); + } catch { /* ignore */ } +} interface PersistedInsight { insight: DashboardInsight; generated_at: number; // epoch ms when LLM generated this @@ -147,6 +176,8 @@ export function DashboardView() { const [error, setError] = useState(null); const [days, setDays] = useState(14); const [fetching, setFetching] = useState(false); + // Bump to force re-read of action results from localStorage + const [actionResultsVersion, setActionResultsVersion] = useState(0); // Per-button completion state for Apply / Run buttons. Persisted in // localStorage alongside the insight so completed actions survive reloads. type ApplyResult = "success" | "error" | "warn"; @@ -698,6 +729,16 @@ export function DashboardView() { } setApplyingSet(prev => { const n = new Set(prev); n.delete(key); return n; }); setApplyResult((prev) => ({ ...prev, [key]: outcome })); + // Persist to action result log + _saveActionResult({ + key, + action_type: a.action_type, + label: a.label, + outcome, + timestamp: Date.now(), + detail: outcome === "error" ? "Action completed with errors" : undefined, + }); + setActionResultsVersion(v => v + 1); void refresh(); } // Re-throw so callers like DeciphermentPanel.handleAction can catch the @@ -715,15 +756,16 @@ export function DashboardView() {

    ๐Ÿ“Š Dashboard

    What’s new, what it means, and what to do about it. - Refreshes every 30 s. Fetch and insight regeneration happen - automatically after research loop runs. + Research feed window refreshes every 30 s. Fetch and insight + regeneration happen automatically after research loop runs.

    - setDays(parseInt(e.target.value, 10))} style={selectStyle}> {[7, 14, 30, 60, 90].map((d) => ( - + ))} {/* Small fetch icon โ€” fetch is automated; this is a manual override */} @@ -750,8 +792,7 @@ export function DashboardView() { gridTemplateColumns: "repeat(auto-fit, minmax(140px, 1fr))" }}> navigate("discovery")} /> - navigate("builder")} /> + {/* Studies removed โ€” no longer part of active workflow */} navigate("experiments")} /> )} + + {/* โ”€โ”€ Action Result Log โ”€โ”€ */} + )} {/* โ”€โ”€ RSS-style feed โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€ */}
    -
    +

    ๐Ÿ“ก Latest feed

    + {data && data.items.length > 0 && ( +
    + Latest: {fmtRelative(data.items[0]?.fetched_at)} ยท {data.n_items} items ({data.items.filter((it: DiscoveryItem) => it.status === "new").length} unreviewed) +
    + )} {data && data.items.length === 0 && (
    No items in the last {days} days. Click โ–ถ Fetch now above @@ -1161,6 +1210,67 @@ function Tally({ title, counts }: { title: string; counts: Record { + if (o === "success") return { text: "โœ“", bg: "#dcfce7", fg: "#15803d" }; + if (o === "error") return { text: "โœ•", bg: "#fef2f2", fg: "#dc2626" }; + return { text: "โš ", bg: "#fffbeb", fg: "#92400e" }; + }; + return ( +
    + + {open && ( +
    + {shown.map((r, i) => { + const chip = outcomeChip(r.outcome); + return ( +
    + + {fmtRelative(new Date(r.timestamp).toISOString())} + + {chip.text} + + {r.label} + + + {r.action_type} + + {r.detail && ( + + {r.detail.slice(0, 40)} + + )} +
    + ); + })} +
    + )} +
    + ); +} + // โ”€โ”€ Styles โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€ const card: React.CSSProperties = { padding: "14px 16px", border: "1px solid #e5e7eb", borderRadius: 10, diff --git a/frontend/src/components/ResearchLoopPanel.tsx b/frontend/src/components/ResearchLoopPanel.tsx index 891c7e2f..d2fb3fc2 100644 --- a/frontend/src/components/ResearchLoopPanel.tsx +++ b/frontend/src/components/ResearchLoopPanel.tsx @@ -114,6 +114,13 @@ export function ResearchLoopPanel() { const [cycles, setCycles] = useState(15); const [log, setLog] = useState([]); const [error, setError] = useState(null); + const [stallReason, setStallReason] = useState(null); + const [failureDetail, setFailureDetail] = useState<{ + reason: string; + cycles_completed: number; + last_experiment: string; + elapsed_seconds: number; + } | null>(null); const [lastRun, setLastRun] = useState(null); const [synthesis, setSynthesis] = useState(null); const [staging, setStaging] = useState(null); @@ -160,6 +167,8 @@ export function ResearchLoopPanel() { } setRunning(true); setError(null); + setStallReason(null); + setFailureDetail(null); setLog([]); setSynthesis(null); @@ -183,6 +192,8 @@ export function ResearchLoopPanel() { try { const event = JSON.parse(line.slice(6)) as CycleEntry & { type?: string; synthesis?: Synthesis; + reason?: string; cycles_completed?: number; + last_experiment?: string; elapsed_seconds?: number; }; if (event.type === "complete") { if (event.synthesis) setSynthesis(event.synthesis); @@ -191,6 +202,15 @@ export function ResearchLoopPanel() { void fetchStatus(); void fetchLastRun(); void fetchStaging(); + } else if (event.type === "error") { + setError(event.reason || "Loop failed"); + setStallReason(event.reason === "timeout" ? "timeout" : null); + setFailureDetail({ + reason: event.reason || "unknown", + cycles_completed: event.cycles_completed ?? 0, + last_experiment: event.last_experiment ?? "", + elapsed_seconds: event.elapsed_seconds ?? 0, + }); } else if (event.cycle) { setLog((prev) => [...prev, event as CycleEntry]); } @@ -399,6 +419,33 @@ export function ResearchLoopPanel() { background: "#fef2f2", border: "1px solid #fca5a5", borderRadius: 6, padding: "6px 10px" }}> {error} + {failureDetail && ( +
    + {stallReason === "timeout" && ( +
    + โฑ Loop timed out after {failureDetail.cycles_completed} cycles. + Try fewer cycles or check backend logs. +
    + )} +
    Cycles completed: {failureDetail.cycles_completed}
    + {failureDetail.last_experiment && ( +
    Last experiment attempted: {failureDetail.last_experiment}
    + )} +
    Time elapsed: {failureDetail.elapsed_seconds < 60 + ? `${failureDetail.elapsed_seconds}s` + : `${Math.floor(failureDetail.elapsed_seconds / 60)}m ${Math.round(failureDetail.elapsed_seconds % 60)}s` + }
    + {stallReason !== "timeout" && failureDetail.reason && ( +
    + {failureDetail.reason} +
    + )} +
    + )}
    )}