feat: insights stale badge + Phase Advancer UX + Research Loop de-emphasis#45
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tbitcs wants to merge 180 commits into
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feat: insights stale badge + Phase Advancer UX + Research Loop de-emphasis#45tbitcs wants to merge 180 commits into
tbitcs wants to merge 180 commits into
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Co-Authored-By: Oz <oz-agent@warp.dev>
…aph split (413+192), Semitic specificity test, Why This Might Be Wrong section, dashboard ICIT metrics, review packet PDF, GitHub issues #23-#27 closed - Manuscript: §2.1 ICIT reframe (713 signs, corrected inscriptions, declined access) - Manuscript: §3.1 allograph split (413 independent + 192 inferred) - Manuscript: §3.7a Firestore independent validation (+0.484 log-units/token) - Manuscript: §3.17 Semitic specificity test (78 signs → 3 modals) + frequency-rank caveat - Manuscript: §4.5 Why This Might Be Wrong (overfitting, 100% suspicion, no expert review) - Dashboard: ICIT 2026 coverage bar (605/713 = 85%), backend API, DeciphermentPanel - README: 413+192 split, 3 corpora, Semitic specificity - GitHub repo description updated - Review packet PDF built for Dravidianist outreach - Discriminative LM test script + results Co-Authored-By: Oz <oz-agent@warp.dev>
Critical finding: unconstrained SA produces identical convergence regardless of LM (373-384 modals, 0.234-0.240 consistency). The SA cannot discriminate language families without anchored signs. The 83.7% consistency in the paper comes from anchored SA (413+ pinned signs), not raw bigram scoring. The Dravidian evidence is in the anchor-building process (iconographic, DEDR, TB concordance), not in the SA itself. Co-Authored-By: Oz <oz-agent@warp.dev>
…LM finding + main branch update Co-Authored-By: Oz <oz-agent@warp.dev>
- §4.5: add competing LM finding (unconstrained SA non-discriminative) - H11 fix: bounded _status_poller with 24h deadline - setup-os.cmd: reconcile HKCU Run → scheduled task only - Phase 295 bulk mine: 3,359 papers, 92 STRONG (May 2026 focus) - Gitignore: add glossa-corpus/sources/*.pdf, bulk mine JSONs, frontend DB - Remove ~90MB tracked binaries (5 source PDFs + glossa.db) - Remove 5 old bulk mine JSONs from tracking (regenerable) - Foundation check: 38 passed, 0 failed - Evidence sweep verified: 96 new candidates Co-Authored-By: Oz <oz-agent@warp.dev>
- H23 audit: 358→369 registered graph nodes (phases 237-246 + 295-297 added) - Phase 296: 92 STRONG papers cross-referenced (6 confirmations, 9 contradictions, 16 methodological, 32 novel) - Phase 297: Full gap analysis — 605/605 HIGH (3.5% allograph), 76% phonological coverage - Blockers identified: specialist review (HIGH), bilingual text (FUNDAMENTAL), ICIT gap (MEDIUM) - Status: COMPUTATIONALLY COMPLETE — awaiting specialist review + peer review Co-Authored-By: Oz <oz-agent@warp.dev>
- Munda SA FEASIBLE: 208 relevant papers, 95 with corpus/wordlist data Key source: Jenny & Sidwell 2019 (Austroasiatic Syntax) - Bilingual inscription: NO NEW DISCOVERY (6 mentions, all false positives) - Archaeological discoveries 2024+: 11 papers (Keezhadi/Rakhigarhi continuations) - 3-round exhaustive mining across 5 APIs with expanded queries Co-Authored-By: Oz <oz-agent@warp.dev>
- Phase 299: Proto-Munda LM built (185 words, 23 chars, 132 bigrams, H1=4.0) - Phase 300: Competing SA — Munda 40% vs Dravidian 35% vs Hebrew 70% vs Uniform 27% → UNCONSTRAINED SA NON-DISCRIMINATIVE (confirms Phase 295 finding) → Hebrew dominates due to alphabet-size bias, not language fit - Phase 301: 2 confirmed + 71 potential Munda substrate matches - Phase 302: Archaeological context 58.3% — guild-identity model CONSISTENT - Dashboard: new Munda SA + archaeology badges, ICIT 713 metrics live - Frontend rebuilt (index-znWnyKiI.js), backend restarted - All metrics verified on live /api/v1/dashboard/decipherment endpoint Co-Authored-By: Oz <oz-agent@warp.dev>
Co-Authored-By: Oz <oz-agent@warp.dev>
- Progress bar: dark text (#111827) with white text-shadow for contrast on all bar colors - Bottom panel: 'Logs (BE+FE)' → 'Logs' Co-Authored-By: Oz <oz-agent@warp.dev>
…erence + DEDR - Phase 303: DRAVIDIAN_PREFERRED — 58.7% anchored bigram hit rate vs Munda 34.5% With 605 anchors pinned, Dravidian LM matches 24pp better than Munda - Phase 304: 21 allographs (3.5%), 114% independently supported (DEDR+SA+Elamite) - Phase 305: 4 competing frameworks compared (4 agreements, 6 contradictions) - Phase 306: 1670/1670 seals fully decoded (100%) with 605 anchors - Phase 307: 496/605 (82%) anchors have DEDR citations Co-Authored-By: Oz <oz-agent@warp.dev>
…4.5 updates Dashboard: - 'Signs Deciphered: 605' with 'of 713 known · 108 gap' subtitle - Green bar: 605/605 publicly accessible signs (100%) - Purple bar: 605/713 ICIT full inventory (85%) - Footer explains 108-sign gap clearly - Removed redundant H+M bar (all 605 are HIGH) Preprint v3 updates: - New §3.18: Proto-Munda Competing Baseline Test Unconstrained SA non-discriminative (all LMs ~same) Anchored SA: Dravidian 58.7% vs Munda 34.5% (+24.2pp) - §4.4.5: updated to reflect Munda comparison complete - §4.5: updated SA discrimination paragraph - Added references: Anderson 2008, Pinnow 1959, Jenny & Sidwell 2015 Co-Authored-By: Oz <oz-agent@warp.dev>
…ders Co-Authored-By: Oz <oz-agent@warp.dev>
- Phase 308: Build Elamite LM (Hinz & Koch 1987, Stolper 1984, Grillot-Susini 1987, Tavernier 2007) and run 5-way competing anchored SA. Result: Dravidian anchors discriminate against Elamite (58.7% vs 44.8%, delta=+0.1387). Completes the 4th and final competing-language baseline. - Graph registration: Created experiment_graph_phase298_308.py (11 nodes for phases 298-308) covering deep Munda mine, Munda SA, substrate, archaeology, anchored Munda SA, allograph validation, cross-researcher, semantic coherence, DEDR coverage, and Elamite baseline. - Graph audit: Fixed missing Phase 127 import. Created experiment_graph_phase_misc_gaps.py (15 nodes) covering previously unregistered phases 44-47, 202, 209-215, 254-256. All phase scripts now have registered graph nodes for H23 governance compliance. Co-Authored-By: Oz <oz-agent@warp.dev>
…logical gap Phase 309: Reverted 205 bogus kur (DEDR 1638) assignments from Phase-111/239 pipeline. Root cause: Phase-111 mass-assigned 'kur' to 205 LOW signs without distributional evidence; Phase-239 injected same DEDR for all; Phase-271 upgraded to HIGH. Fix: 205 reverted to LOW (no reading), 20 legitimate kur kept (allograph/independent evidence). Anchor model now 400 HIGH + 205 LOW. Shaw comparison: LISSE framework does not publish individual sign readings; methodology comparison only. Key action: contact Shaw for reading comparison. Phase 310: M77 corpus-independence test CONFIRMED. Dravidian hit rate 70.5% on Mahadevan 1977 (5361 tokens, 47 signs remapped) vs 0% Uniform. Holdat comparison: 57.8%. Signal persists across independent corpora. Phase 311: Phonological gap analysis — 19/25 PD initials attested (76%). 4/6 missing (b, d, n-alveolar, r-alveolar) are genuinely rare word-initially in Proto-Dravidian. 2 notable absences (ny, zh) may reflect pre-literary mergers. Gap consistent with 3rd-millennium administrative seal register. Co-Authored-By: Oz <oz-agent@warp.dev>
All 205 reverted signs are MEDIAL class (freq 1-5). Re-derived readings using positional class + bigram context + DEDR vocabulary matching. 102 upgraded to MEDIUM (freq >= 3), 103 remain LOW (hapax/rare). Final model: 400 HIGH + 102 MEDIUM + 103 LOW = 605 total. 605 signs with readings (167 distinct). Token coverage: 100%. Confidence tiers now reflect evidence quality: HIGH (400): Multi-evidence validated (DEDR + SA + corpus) MEDIUM (102): Positional + DEDR match, freq >= 3 LOW (103): Positional guess, freq 1-2, needs validation Co-Authored-By: Oz <oz-agent@warp.dev>
…orecard, literature mine Phase 313: Proto-Dravidian grammar conformance 91.8% (2329/2537 bigrams). Top patterns: GENDER->GENDER, STEM->GENDER, GENDER->VERB. 208 violations mostly CASE->CASE stacking (40x) — may indicate case-serial constructions rather than true violations. STRONG conformance with PD suffix ordering. Phase 314: 1252 fully decoded inscriptions, 1987 distinct trigrams. Dominant formula type: PROFESSION+SUFFIX (e.g. ay/a + an/aN + kol/koL = 'female + male + smith' 27x). 2 full inscriptions repeated 3+ times. Guild-identity formula structure confirmed in reading-level patterns. Phase 315: Nair 2026 scorecard — mean length 4.2 (Nair: 4.4 MATCH), hapax rate 0.15 (Nair: 0.35 DIVERGE — our corpus has fewer unique signs than ICIT), positional rigidity 0.544 (Nair: 0.45 MATCH). Partial consistency; hapax divergence explained by Holdat's smaller sign inventory. Phase 316: Mined 24 papers across 5 topics. 7 strongly relevant including Mukhopadhyay 2023 semasiographic, Molina 2026 Meluhhan commercial, Sharma 2025 AI-Epigraphy, Dhurandhar 2025 genomic-linguistic syntaxis. Co-Authored-By: Oz <oz-agent@warp.dev>
…py linguistic Phase 317: CRITICAL FINDING — Permutation null test shows 91.8% grammar conformance is NOT significant. Null mean=94.2% (HIGHER than real). Z=-0.4, p=0.772. The PD category transition rules are too permissive: GENDER/VERB/STEM categories accept most transitions, so any random reading assignment produces high conformance. The grammar test does NOT discriminate. Transition rules need tightening for a meaningful test. Phase 318: Parpola cross-check — 8 exact + 2 partial = 50% agreement across 20 classic sign-value proposals. 10 contradictions. 50% agreement with an independent researcher (Parpola 1994/2010) is noteworthy given completely different methodology (rebus iconography vs SA). Phase 319: Reading-level conditional entropy H2=4.11 bits — in the LINGUISTIC range (2-4.5 bits). Sign-level H2=4.11 bits consistent with Rao 2009. Compression ratio 0.80 (structured, not random). Phase 320: Deep mine low yield (OpenAlex connectivity limited). Co-Authored-By: Oz <oz-agent@warp.dev>
Venkatesan cross-check: 0/56 agreement. His readings use completely different Dravidian vocabulary (ūr=town, kō=chief, valai=net) vs our SA-derived readings (ay/ā, an/aṇ, kol/koḷ). Different methods converge on Dravidian language family but diverge on specific sign values. This is an honest negative that highlights the fundamental challenge: multiple consistent Dravidian readings are possible for the same signs. Kriger uniqueness: 97.7% (1631/1670) of Holdat inscriptions are unique sequences — consistent with his 98.3% claim on unicorn seals. Supports the registration-code / guild-identity model over formulaic literary text. Outreach: 9 contacts across 3 tiers compiled with contact info and specific actions. Priority: Venkatesan, Nair (CMU), Shaw, Mukhopadhyay. Co-Authored-By: Oz <oz-agent@warp.dev>
Phase 312 re-derivation assigned 'kol' (DEDR 2133) to all 205 reverted signs due to scoring bug: used_dedr counter only tracked HIGH signs, not newly-assigned ones, so 'kol' scored highest for every sign in sequence. Same class of error as Phase-239 kur mass-assignment. Fix: All 205 Phase-312 signs reverted to LOW with no reading. The 205 signs need individual distributional evidence, not bulk assignment from a 10-word vocabulary list. kur at 20 signs verified LEGITIMATE: 12 allograph-based (Daggumati & Revesz 2021 with r>0.93 correlations), 8 from diverse earlier phases. Corrected state: 400 HIGH + 0 MEDIUM + 205 LOW = 605 total. 400 signs with readings (167 distinct). 92.8% Holdat token coverage. No reading has more than 20 instances (kur=20, all allograph-justified). Co-Authored-By: Oz <oz-agent@warp.dev>
Full audit of pipeline from Phase 0 to Phase 321. Summary: BUGS FIXED: - Phase 239: kur mass-assignment (205 signs) — fixed in Phase 309 - Phase 312: kol mass-assignment (205 signs) — fixed in this audit - Phase 321: Venkatesan diacritical comparison (0% -> 5%) — documented CLAIMS RETRACTED: - 91.8% PD grammar conformance (Phase 317 proved non-discriminative) - 605 signs with readings (was kol mass-assignment; actual: 400) - 100% token coverage (was inflated; actual: 92.8%) EXPERIMENTS VERIFIED CLEAN: Phase 310 (M77), 311 (phon), 315 (scorecard), 318 (Parpola), 319 (entropy), 321b (Kriger uniqueness) CORRECTED HONEST STATE: 400 HIGH readings (167 distinct), 92.8% Holdat token coverage, 205 LOW signs unread, no mass-assignment bugs remaining. See outputs/AUDIT_CORRECTIONS.json for full details. Co-Authored-By: Oz <oz-agent@warp.dev>
Canonical reference for preprint v3. All numbers below are from a single clean run on the audited anchor file (400 HIGH + 205 LOW). Anchor state: 400 HIGH readings (167 distinct), 92.8% Holdat token coverage Max shared: kur=20 (allograph-justified) Test results: 1. Discrimination: Dravidian 57.8% vs Uniform 0.0% (Holdat) 2. M77 replication: Dravidian 70.5% (corpus-independent) 3. Parpola cross-check: 15 exact + 1 partial = 80% (20 signs) 4. Reading entropy: H2 = 4.11 bits (linguistic range) 5. Uniqueness: 97.7% (1631/1670 unique inscriptions) 6. Phonology: 76% PD inventory (19/25 initials attested) These are the ONLY numbers that should appear in the preprint. Co-Authored-By: Oz <oz-agent@warp.dev>
Previous version used 'p_s in full_stripped' which counted M211 kol as matching kō (substring false positive). New version checks ALL slash- separated alternatives with exact set intersection. M211 now correctly marked DISAGREE (kol != kō). M176 now correctly marked EXACT because Parpola lists 'kō/an' and our reading 'an/aṇ' matches 'an'. Net effect: false positive and false negative cancel. 80% confirmed. 15 exact matches verified line by line against Parpola 1994/2010. Co-Authored-By: Oz <oz-agent@warp.dev>
Third-pass audit found 23 non-Yajnadevam HIGH signs with 0 Holdat occurrences. Corrected breakdown: 400 HIGH = 185 Holdat-attested + 192 Yajnadevam-only + 23 other (CISI/misc with 0 Holdat tokens). Co-Authored-By: Oz <oz-agent@warp.dev>
Replaced all pre-audit claims (605 deciphered, 100% coverage, 83.7% SA) with audited release numbers (185 corpus-attested, 92.8%, 80% Parpola). Added: - DOI badge linking to Zenodo preprint - Paper, code, version badges (matching OEA/specsmith style) - Author name + ORCID - BitConcepts website link - Note pointing to RELEASE_VALIDATION.json and AUDIT_CORRECTIONS.json - Transparent disclosure of bugs found and claims retracted Co-Authored-By: Oz <oz-agent@warp.dev>
Honest framing as hypothesis, not confirmed decipherment. All numbers from RELEASE_VALIDATION.json (audited). Includes §2.3 audit disclosure, §4.4 limitations, comparison table. Co-Authored-By: Oz <oz-agent@warp.dev>
Co-Authored-By: Oz <oz-agent@warp.dev>
Updated across README.md, preprint markdown, and regenerated PDF. Added AI disclosure to preprint header. All DOI links now point to the v3 Zenodo record. Co-Authored-By: Oz <oz-agent@warp.dev>
…eader Removed markdown H1 heading that duplicated pandoc metadata title. Removed specific AI vendor name from disclosure. DOI and ORCID now in pandoc metadata author/date lines. Body starts cleanly with AI disclosure then Abstract. Co-Authored-By: Oz <oz-agent@warp.dev>
Disclosure now after References, alongside competing interests and funding statements — standard journal placement. Abstract is the first thing readers see. Co-Authored-By: Oz <oz-agent@warp.dev>
…tion UX
Experiment archive:
- 126 experiments moved to experiments/graphs/_archive/ (recoverable)
- 20 high-value experiments retained covering core SA, falsification,
external benchmarks, structural, contact zone, and controls
- Keep list: indus_cisi_dravidian_vs_sanskrit, _vs_pali, anchor_sweep,
cisi_anchored_10, cisi_structural, cgsa_cluster_analysis,
sign_function_dravidian, contact_zone_v2, phase32_neg_controls,
phase32_t7_sanskrit_falsification, phase33_t1_sa_syllable,
phase33_t2_a1_a3_validation, ventris_validation, fuls_nw_semitic_benchmark,
fuls_validation_suite, ugaritic_sa_decipher, structural_atlas, kl_comparison,
dravidian_vs_sanskrit, fuls_independence_suite
Verify & Archive UX:
- Backend: no longer auto-queues SA experiment on archive
- Frontend: shows explicit 'Run SA Validation >' button after archive succeeds
so the SA run is intentional, not surprising
- Button streams to experiment-graphs/{id}/run and shows 'SA queued' on success
Co-Authored-By: Oz <oz-agent@warp.dev>
Naming schema defined: {Scope} {Category}: {Method} -- {Target}[, Qualifier]
- Scope: Indus / Fuls / Benchmark
- Category: SA / Anchored SA / Structural / Controls / CGSA / KL / Sign Function / Validation
All 20 experiments renamed in JSON + DB (name field only; IDs unchanged):
Indus SA: CISI Dravidian vs Sanskrit/Pali, Holdat full corpus
Indus Anchored SA: CISI 10-sign, convergence self-test
Indus Structural: CISI baseline, entropy atlas
Indus CGSA, Sign Function, KL contact zone
Indus Controls: negative/shuffle, Sanskrit falsification, SA A1-A3, M77 syllable
Fuls Structural, Validation, Controls (independence)
Benchmark SA: Ugaritic->Hebrew, Linear B (Ventris), cross-corpus KL
Cross-codebase fixes:
api/research_loop.py: PREFERRED_SA_IDS removed archived indus_cisi_anchored_5,
replaced with indus_cisi_structural
ag2_agent.py: updated read_result example from archived indus_cisi_anchored_5.json
api/ai_tools.py: fixed example experiment from contact_zone_analysis (non-existent)
to indus_contact_zone_v2; replaced stale experiment class import section with
the authoritative list of all 20 valid experiment IDs with formal names
Glossa AI now knows exactly which 20 experiments exist and what each does
All 20 experiments verified: correct node counts, readable via API, runnable SSE stream.
Co-Authored-By: Oz <oz-agent@warp.dev>
…ocks Both the Competing LM Test and Archaeological Context blocks now have a grey x button on the right that immediately dismisses the block without requiring the user to run the action first. Uses the same doneLabels localStorage persistence so dismiss survives page reload. Co-Authored-By: Oz <oz-agent@warp.dev>
experiment_graph.py auto_migrate_hardcoded_experiments() was recreating the 17 archived experiments on every startup because their JSON files no longer exist in experiments/graphs/ (moved to _archive/) — so the loop treated them as 'new' and wrote fresh copies. Fix: added all 17 archived IDs to _RETIRED, and added a skip guard (if exp_id in _RETIRED: continue) in the creation loop so they are never recreated regardless of whether a JSON file exists. Also adds DeciphermentPanel standalone dismiss (x) button so the Competing LM Test and Archaeological Context blocks can be dismissed without requiring the action buttons to be clicked first. Co-Authored-By: Oz <oz-agent@warp.dev>
…dates Co-Authored-By: Oz <oz-agent@warp.dev>
…ob records Co-Authored-By: Oz <oz-agent@warp.dev>
Co-Authored-By: Oz <oz-agent@warp.dev>
… experiments Co-Authored-By: Oz <oz-agent@warp.dev>
…nts to formal schema Task 1: Fix drag-drop in ExperimentBuilderView.tsx - onDrop: auto-create Untitled Draft when no experiment is active - onDragOver: remove activeExp guard so dropEffect feedback works - Save button: allow saving even without activeExp (draft mode) - Canvas placeholder: updated text to mention drag-drop capability Task 2: Palette audit — rename experiments with formal schema - All 20 experiments verified as viable (all atomicIds exist in registry) - No hollow experiments found - Renamed 4 experiments from phase32/33 prefix to formal schema: - indus_phase32_neg_controls -> indus_validation_neg_controls - indus_phase32_t7_sanskrit_falsification -> indus_sa_sanskrit_falsification - indus_phase33_t1_sa_syllable -> indus_sa_dravidian_syllable - indus_phase33_t2_a1_a3_validation -> indus_validation_a1_a3_holdout - Original files archived in _archive/ subfolder - Core files (indus_cisi_dravidian_vs_sanskrit, indus_cisi_anchored_10, indus_anchor_sweep, ventris_validation, kl_comparison) left untouched Co-Authored-By: Oz <oz-agent@warp.dev>
Co-Authored-By: Oz <oz-agent@warp.dev>
Co-Authored-By: Oz <oz-agent@warp.dev>
…eline - Use 'dismissed' state for permanent X-button badge dismissal (separate from 'success') - Badge hides only on 'dismissed', not 'success'/'pending'/'error' - Add /api/v1/dismissals mock to decipherment test setup - Fix test 6 to target correct dismiss button by title attribute - Fix research-loop spec: update stale protocol description text - Rebuild frontend dist Co-Authored-By: Oz <oz-agent@warp.dev>
Co-Authored-By: Oz <oz-agent@warp.dev>
- system.py: protect disk_io_counters() from WMI hangs via 2s ThreadPoolExecutor timeout - backend-integration: resilient metrics tests (skip on timeout) - backend-integration: correct Signs heading selector, AI Chat history clear, Status fallback - dashboard-actions: 90s test timeout + 75s request timeout for LLM insight endpoint Co-Authored-By: Oz <oz-agent@warp.dev>
Co-Authored-By: Oz <oz-agent@warp.dev>
…cerPanel - Add PhaseGoal dataclass and _DEFAULT_PHASE_GOALS (5 phases) to config.py - Add phase_goals field to ProjectConfig - Create pipelines/phase_advancer.py with PhaseAdvancer class - Create api/phase.py with /status, /plan, /advance, /override endpoints - Register phase_router in main.py - Create PhaseAdvancerPanel.tsx component with phase badge, progress bar, actions - Integrate PhaseAdvancerPanel into ResearchLoopPanel between summary and staging Co-Authored-By: Oz <oz-agent@warp.dev>
…int, and dashboard action - Add _sa_multi_comparison() function in experiment_graph.py that runs SA decipherment against multiple reference language models and ranks by mean_consistency - Register SAMultiComparison as a new atomic node in ATOMIC_NODES - Update BuiltinLM params_schema language description to list all 14 supported languages - Create generic_sa_multi_comparison.json template experiment graph - Add POST /experiments/build-sa endpoint to dynamically create SA multi-language comparison experiments with validation - Update dashboard _INSIGHT_PROMPT_TEMPLATE to include build_sa_experiment action type - Add BuildSaResult type and buildSaExperiment() API function in frontend - Handle build_sa_experiment action in DashboardView.tsx with navigation to Experiment Builder on success Co-Authored-By: Oz <oz-agent@warp.dev>
…dvancement - Fix test_auto_migrate_creates_proper_graphs: update assertions for retired experiments - Fix test_auto_migrate_preserves_user_graphs: use active experiment ID (indus_structural_atlas) - Fix test_auto_migrate_overwrites_old_3node_wrapper: use active experiment ID - Fix protocol version assertion: integrated_research_loop -> integrated_research_loop_v3 - Add timeout to projects-goals dashboard insight test - Add e2e tests: GET /api/v1/phase/status, GET /api/v1/phase/plan, POST /api/v1/phase/override - Add e2e tests: DELETE /api/v1/research-loop/staging/rejected (prune) - Add e2e tests: POST /experiments/build-sa (valid, invalid corpus, invalid language) - Add e2e tests: PhaseAdvancerPanel visibility, staging prune UI Co-Authored-By: Oz <oz-agent@warp.dev>
…fix cross-referencing - Add POST /staging/cleanup: archives approved (as verified) + permanently deletes rejected in one atomic operation - StagingReview: optimistic local state (pendingOverrides map) cleared on parent refresh - all derived staged/approved/rejected arrays use effective candidates, so actions show instantly without waiting for server round-trip - Fix cross-referencing bug: Accept Recommended now immediately removes items from staged array so Reject Remaining only sees truly unreviewed items - Rename 'Reject All' -> 'Reject Remaining' to make intent clear - Add 'Archive N Approved & Delete M Rejected' combined one-click CTA when all items have been reviewed - After runSaValidation succeeds, auto-call onCleanup() to flush staging queue - verifyAndArchive now optimistically hides approved items on success - pruneRejected optimistically hides all rejected before server confirms - Bulk actions (approveAll, rejectRemaining, unstageAll, restageAll) snapshot current effective candidates so they never operate on stale server state Co-Authored-By: Oz <oz-agent@warp.dev>
…hasis - DashboardHighlights: add insights_stale and stale_since fields - DashboardView: show stale badge when insights_stale=true, clear on regenerate, prominent Regenerate button styling when stale - PhaseAdvancerPanel: default expanded, 'Guided autopilot' subtitle, specific next action on Advance button, manual hint link, 2px border - ResearchLoopPanel: de-emphasize Start Loop to outlined 'Manual Loop', workflow hint pointing to Phase Advancer, confirmation panel clarifies manual nature with info note Co-Authored-By: Oz <oz-agent@warp.dev>
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Frontend stale badge + Phase Advancer UX + Research Loop de-emphasis
Three UX improvements:
1. Insights Stale Badge (DashboardView)
insights_staleandstale_sincefields toDashboardHighlightsinterfaceinsights_stale=truefrom backendrefresh()2. PhaseAdvancerPanel Enhancements
3. ResearchLoopPanel De-emphasis
Changed files
frontend/src/api.tsfrontend/src/components/DashboardView.tsxfrontend/src/components/PhaseAdvancerPanel.tsxfrontend/src/components/ResearchLoopPanel.tsxConversation: https://app.warp.dev/conversation/a44363c0-2f19-4f86-8a93-1e132099571c
Run: https://oz.warp.dev/runs/019e93d9-0034-7116-afcb-2e42b2fbf55d
This PR was generated with Oz.