galaxy-tools-blankenberg

Contains a set of Galaxy Tools written by the Blankenberg Lab

Continuous integration

GitHub Actions run Planemo linting and tests for changed tool repositories on pull requests and pushes to main or master. A scheduled workflow also runs the full repository weekly. Both workflows follow the same Planemo CI action pattern used by tools-iuc and galaxytools-bgruening.

For local checks, install Planemo and use the Makefile targets:

python -m pip install planemo
make lint
make test

To check a single repository:

make lint TOOL_DIRS=tools/column_regex_substitution
make test TEST_DIRS=tools/column_regex_substitution