versio 10.9 - fix missing BAFs

valeu · valeu · commit 20346cdcce17 · 2017-07-06T17:11:22.000+02:00
diff --git a/src/ChrCopyNumber.cpp b/src/ChrCopyNumber.cpp
@@ -1678,7 +1678,7 @@ void ChrCopyNumber::addBAFinfo(SNPinGenome & snpingenome,int indexSNP) {
                     }
                 else
                     {
-                    i=max(-1,i-windowSize_/step_-1);
+                    i=max(-1,i-windowSize_/step_-2); //changed -1 to -2 in version 10.9
                     }
                     //cout << SNPcount << " out of "<< totalSNPnumber<<"\n";
             }
diff --git a/src/freec b/src/freec
diff --git a/src/version.h b/src/version.h
@@ -3,7 +3,7 @@
 #define VERSION_H
 
 const double VERSION_OFFSET = 3;
-const double FREEC_VERSION = 10.8;
+const double FREEC_VERSION = 10.9;
 const double CONTROL_FREEC_VERSION = FREEC_VERSION - VERSION_OFFSET;
 
 #endif

Original file line number	Diff line number	Diff line change
`@@ -1678,7 +1678,7 @@ void ChrCopyNumber::addBAFinfo(SNPinGenome & snpingenome,int indexSNP) {`
`1678`	`1678`	`}`
`1679`	`1679`	`else`
`1680`	`1680`	`{`
`1681`		`- i=max(-1,i-windowSize_/step_-1);`
	`1681`	`+ i=max(-1,i-windowSize_/step_-2); //changed -1 to -2 in version 10.9`
`1682`	`1682`	`}`
`1683`	`1683`	`//cout << SNPcount << " out of "<< totalSNPnumber<<"\n";`
`1684`	`1684`	`}`