refactor: update dependencies and clean up code formatting

Author: richardkoehler

src/clinical_dbs_annotator/config.py

@@ -9,7 +9,6 @@
 
 from .version import get_version
 
-
 APP_NAME = "Clinical DBS Annotator"
 APP_VERSION = get_version()
 ORGANIZATION_NAME = "BML"
@@ -101,7 +100,7 @@
 CLINICAL_SCALES_PRESETS: dict[str, list[str]] = {
     "OCD": [
         "Y-BOCS",   # Yale–Brown Obsessive–Compulsive Scale
-        "Y-BOCS-o", "Y-BOCS-c", 
+        "Y-BOCS-o", "Y-BOCS-c",
         "MADRS",    # Montgomery–Åsberg Depression Rating Scale
         "OCI-R",    # Obsessive–Compulsive Inventory – Revised
     ],
@@ -133,7 +132,7 @@
 }
 
 SESSION_SCALES_PRESETS: dict[str, list[tuple[str, str, str]]] = {
-    "OCD": [        
+    "OCD": [
         ("Obsessions", "0", "10"),
         ("Compulsions", "0", "10"),
         ("Anxiety", "0", "10"),
@@ -150,12 +149,12 @@
         ("Tremor", "0", "10"),
         ("Rigidity", "0", "10"),
         ("Bradykinesia", "0", "10"),
-        ("Dyskinesia", "0", "10"),        
+        ("Dyskinesia", "0", "10"),
         ("Gait / balance", "0", "10"),
         ("Paresthesia", "0", "10"),
         ("Speech difficulty", "0", "10"),
     ],
-    "ET": [        
+    "ET": [
         ("Action tremor", "0", "10"),
         ("Resting tremor", "0", "10"),
         ("Paresthesia", "0", "10"),

src/clinical_dbs_annotator/models/session_data.py

@@ -9,7 +9,6 @@
 from datetime import datetime
 from pathlib import Path
 from typing import TextIO
-
 from zoneinfo import ZoneInfo, ZoneInfoNotFoundError
 
 from ..config import TIMEZONE, TSV_COLUMNS

src/clinical_dbs_annotator/version.py

@@ -11,7 +11,6 @@
 from importlib import metadata
 from pathlib import Path
 
-
 _DIST_NAME = "clinical-dbs-annotator"
 
 
@@ -24,12 +23,12 @@ def get_version() -> str:
     """
     try:
         return metadata.version(_DIST_NAME)
-    except Exception:
+    except Exception as e:
         init_path = Path(__file__).with_name("__init__.py")
         text = init_path.read_text(encoding="utf-8")
         m = re.search(r'^__version__\s*=\s*["\']([^"\']+)["\']\s*$', text, flags=re.MULTILINE)
         if not m:
-            raise RuntimeError(f"Could not determine version from {init_path}")
+            raise RuntimeError(f"Could not determine version from {init_path}") from e
         return m.group(1)