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Merged
Lucia-Poma merged 6 commits into from
Apr 15, 2026
Merged

Enh/reports graphics #33

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e5110ad
enh: config cleanup
Lucia-Poma Apr 13, 2026
86ed2c1
enh: improved graphs in reports
Lucia-Poma Apr 14, 2026
2d0ad78
enh: report graphs in matplotlib
Lucia-Poma Apr 15, 2026
07f85e9
Merge branch 'main' into enh/reports-graphics
Lucia-Poma Apr 15, 2026
a4c4649
Merge branch 'main' into enh/reports-graphics
Lucia-Poma Apr 15, 2026
c572063
Merge branch 'enh/reports-graphics' of https://github.com/Brain-Modul…
Lucia-Poma Apr 15, 2026
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2 changes: 1 addition & 1 deletion pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -25,8 +25,8 @@ dependencies = [
"python-docx>=1.1",
"docx2pdf>=0.1.8",
"pydantic>=2.0",
"pyqtgraph>=0.14.0",
"pyside6>=6.11.0",
"matplotlib>=3.5",
]

[dependency-groups]
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26 changes: 13 additions & 13 deletions src/clinical_dbs_annotator/config/clinical_presets.json
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@@ -1,30 +1,30 @@
{
"Dystonia": [
"BFMDRS",
"TWSTRS"
],
"ET": [
"FTM-TRS",
"TETRAS"
],
"MDD": [
"MADRS",
"HAM-D",
"BDI-II"
],
"OCD": [
"Y-BOCS",
"Y-BOCS-o",
"Y-BOCS-c",
"MADRS",
"OCI-R"
],
"MDD": [
"MADRS",
"HAM-D",
"BDI-II"
],
"PD": [
"MDS-UPDRS",
"UPDRS-III",
"PDQ-39",
"UDysRS"
],
"ET": [
"FTM-TRS",
"TETRAS"
],
"Dystonia": [
"BFMDRS",
"TWSTRS"
],
"TS": [
"YGTSS",
"PUTS",
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4 changes: 4 additions & 0 deletions src/clinical_dbs_annotator/controllers/wizard_controller.py
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Expand Up @@ -684,6 +684,7 @@ def export_longitudinal_report(
fmt: str,
parent_widget=None,
sections=None,
clinical_scale_prefs: list | None = None,
) -> None:
"""
Generate a longitudinal report combining data from multiple TSV files.
Expand All @@ -693,11 +694,14 @@ def export_longitudinal_report(
scale_prefs: Scale optimization prefs [(name, min, max, mode, custom_value), ...]
fmt: "word" or "pdf"
parent_widget: Parent widget for dialogs
sections: List of section keys to include
clinical_scale_prefs: Clinical scale prefs, same format as scale_prefs
"""
from ..utils.longitudinal_exporter import LongitudinalExporter

exporter = LongitudinalExporter()
exporter.set_scale_optimization_prefs(scale_prefs)
exporter.set_clinical_scale_prefs(clinical_scale_prefs)

if fmt == "word":
exporter.export_to_word(file_paths, parent_widget, sections=sections)
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