Added src files

Author: zbpvarun

src/CortElecLoc2spreadsheet.m

@@ -0,0 +1,69 @@
+function CortElecLoc2spreadsheet(pt)
+
+
+
+%% load patient-specific electrode locations
+if cfg.pt == 3019
+    clear pathtofile
+    pathtofile = sprintf('/Volumes/Nexus/DBS/DBS%4.0f/Anatomy/FreeSurfer/preop/Electrode_Locations/archive/Dengyu',cfg.pt);
+    cd(pathtofile)
+    load('CortElecLocL_SMC_eq.mat')
+else
+    clear pathtofile
+    pathtofile = sprintf('/Volumes/Nexus/DBS/DBS%4.0f/Anatomy/FreeSurfer/preop/Electrode_Locations',cfg.pt);
+    cd(pathtofile)
+    load('CortElecLocL_eq.mat')
+end
+
+%only proceed with first 1:63 electrodes for now
+for chann = 1:126
+    CortElecLoc2{chann} = CortElecLoc{chann};
+end
+clear CortElecLoc
+CortElecLoc = CortElecLoc2;
+
+
+%some patients have "inverted" electrode arrays (eg. LFP 1 would be on LFP 21, and vice versa)
+if cfg.pt == 3017
+    CortElecLoc(1:21)  = flip(CortElecLoc(1:21));
+    CortElecLoc(22:42) = flip(CortElecLoc(22:42)); 
+    CortElecLoc(43:63) = flip(CortElecLoc(43:63)); 
+end
+
+%% assign values
+
+for i = 1:63
+    
+    mat(i,1) = CortElecLoc{i}(1);
+    mat(i,2) = CortElecLoc{i}(2);
+    mat(i,3) = CortElecLoc{i}(3);
+    
+end
+
+mat(64,1) = NaN;
+mat(64,2) = NaN;
+mat(64,3) = NaN;
+
+
+for i = 65:126
+
+    mat(i,1) = CortElecLoc{i}(1);
+    mat(i,2) = CortElecLoc{i}(2);
+    mat(i,3) = CortElecLoc{i}(3);
+
+end
+
+for i = 127:163
+
+    mat(i,1) = NaN;
+    mat(i,2) = NaN;
+    mat(i,3) = NaN;
+
+end
+
+
+
+% MANUALLY copy "mat" to the spreadsheet result
+
+
+