Add a standard spatial smoothing script. Starting point, of using AFNI function:
Smooth whole dataset
3dBlurToFWHM -FWHM 4 -automask -prefix ALLSmoothed4mm.nii.gz -input Not_Smoothing.nii.gz
Or just smooth within a mask
3dBlurToFWHM -FWHM 4 -mask GMmask.nii.gz –prefix GMSmoothed4mm.nii.gz –input Not_Smoothing.nii.gz
Add a standard spatial smoothing script. Starting point, of using AFNI function:
Smooth whole dataset
3dBlurToFWHM -FWHM 4 -automask -prefix ALLSmoothed4mm.nii.gz -input Not_Smoothing.nii.gzOr just smooth within a mask
3dBlurToFWHM -FWHM 4 -mask GMmask.nii.gz –prefix GMSmoothed4mm.nii.gz –input Not_Smoothing.nii.gz