CodeEntropy/.github/workflows/pr.yaml at fff63152cbd8f4a4f87c063dfd2a74d27834da48 · CCPBioSim/CodeEntropy · GitHub

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name: CodeEntropy PR

on:
  pull_request:

concurrency:
  group: pr-${{ github.ref }}
  cancel-in-progress: true

jobs:
  unit:
    name: Unit tests (py${{ matrix.python-version }} • ${{ matrix.os }})
    runs-on: ${{ matrix.os }}
    timeout-minutes: 25
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-24.04, macos-14, windows-2025]
        python-version: ["3.12", "3.13", "3.14"]
    steps:
      - name: Checkout repo
        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
        with:
          python-version: ${{ matrix.python-version }}
          cache: pip

      - name: Install CodeEntropy and its testing dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install -e .[testing]

      - name: Run unit test suite
        run: |
          python -m pytest tests/unit -q

  regression-quick:
    name: Quick regression (py${{ matrix.python-version }} • ${{ matrix.os }})
    needs: unit
    runs-on: ${{ matrix.os }}
    timeout-minutes: 35
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-24.04, macos-14, windows-2025]
        python-version: ["3.12", "3.13", "3.14"]
    steps:
      - name: Checkout repo
        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
        with:
          python-version: ${{ matrix.python-version }}
          cache: pip

      - name: Cache regression test data downloads
        uses: actions/cache@v4
        with:
          path: .testdata
          key: codeentropy-testdata-v1-${{ runner.os }}-py${{ matrix.python-version }}

      - name: Install CodeEntropy and its testing dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install -e .[testing]

      - name: Run quick regression suite (slow excluded)
        run: |
          python -m pytest tests/regression -q

      - name: Upload regression artifacts on failure
        if: failure()
        uses: actions/upload-artifact@v4
        with:
          name: quick-regression-failure-${{ matrix.os }}-py${{ matrix.python-version }}
          path: |
            .testdata/**
            tests/regression/**/.pytest_cache/**
            /tmp/pytest-of-*/pytest-*/**/config.yaml
            /tmp/pytest-of-*/pytest-*/**/codeentropy_stdout.txt
            /tmp/pytest-of-*/pytest-*/**/codeentropy_stderr.txt
            /tmp/pytest-of-*/pytest-*/**/codeentropy_output.json

  docs:
    name: Docs build (latest)
    runs-on: ubuntu-24.04
    timeout-minutes: 25
    steps:
      - name: Checkout repo
        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6

      - name: Set up Python 3.14
        uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
        with:
          python-version: "3.14"
          cache: pip

      - name: Install python dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install -e .[docs]

      - name: Build docs
        run: |
          cd docs
          make

  pre-commit:
    name: Pre-commit
    runs-on: ubuntu-24.04
    timeout-minutes: 15
    steps:
      - name: Checkout repo
        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6

      - name: Set up Python 3.14
        uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
        with:
          python-version: "3.14"
          cache: pip

      - name: Install python dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install -e .[pre-commit]

      - name: Run pre-commit
        shell: bash
        run: |
          pre-commit install
          pre-commit run --all-files || {
            git status --short
            git diff
            exit 1
          }