rename disable_water_entropy to water_entropy for improved clarity

Author: harryswift01

CodeEntropy/config/arg_config_manager.py

@@ -59,10 +59,10 @@
         "default": "output_file.json",
     },
     "force_partitioning": {"type": float, "help": "Force partitioning", "default": 0.5},
-    "disable_water_entropy": {
+    "water_entropy": {
         "type": bool,
-        "help": "If set to True, disables the calculation of water entropy",
-        "default": False,
+        "help": "If set to False, disables the calculation of water entropy",
+        "default": True,
     },
 }
 

CodeEntropy/entropy.py

@@ -44,7 +44,7 @@ def execute(self):
         number_frames = self._get_number_frames(start, end, step)
 
         has_water = self._universe.select_atoms("water").n_atoms > 0
-        if has_water and not self._args.disable_water_entropy:
+        if has_water and self._args.water_entropy:
             self._calculate_water_entropy(self._universe, start, end, step)
 
             if self._args.selection_string != "all":