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ci: update workflows for unit, quick regression, and weekly full regression:
Run unit tests across all supported OS and Python versions, add quick regression suite to PRs with .testdata caching, and configure weekly workflow to run full regression including slow tests. Simplify docs builds to latest environment.
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‎.github/workflows/daily.yaml‎

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name: CodeEntropy Daily Checks
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on:
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schedule:
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- cron: '0 8 * * 1-5'
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workflow_dispatch:
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concurrency:
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group: daily-${{ github.ref }}
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cancel-in-progress: true
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jobs:
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unit:
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name: Daily unit tests
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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os: [ubuntu-24.04, windows-2025, macos-15]
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python-version: ["3.12", "3.13", "3.14"]
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timeout-minutes: 30
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steps:
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- name: Checkout repo
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uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
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with:
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python-version: ${{ matrix.python-version }}
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cache: pip
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- name: Install CodeEntropy and its testing dependencies
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run: |
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pip install --upgrade pip
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pip install -e .[testing]
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- name: Run unit test suite
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run: pytest tests/unit -q
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coverage:
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name: Coverage (ubuntu, latest python)
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runs-on: ubuntu-24.04
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timeout-minutes: 30
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steps:
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- name: Checkout repo
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uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6
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- name: Set up Python 3.14
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uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
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with:
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python-version: "3.14"
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cache: pip
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- name: Install CodeEntropy and its testing dependencies
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run: |
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pip install --upgrade pip
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pip install -e .[testing]
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- name: Run unit test suite with coverage
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run: pytest tests/unit --cov CodeEntropy --cov-report term-missing --cov-report xml -q
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- name: Coveralls GitHub Action
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uses: coverallsapp/github-action@5cbfd81b66ca5d10c19b062c04de0199c215fb6e # v2.3.7
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with:
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github-token: ${{ secrets.GITHUB_TOKEN }}
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file: coverage.xml

‎.github/workflows/mdanalysis-compatibility-failure.md‎

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‎.github/workflows/mdanalysis-compatibility.yaml‎

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‎.github/workflows/pr.yaml‎

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name: CodeEntropy PR
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on:
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pull_request:
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concurrency:
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group: pr-${{ github.ref }}
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cancel-in-progress: true
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jobs:
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unit:
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name: Unit tests (py${{ matrix.python-version }} • ${{ matrix.os }})
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runs-on: ${{ matrix.os }}
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timeout-minutes: 25
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strategy:
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fail-fast: false
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matrix:
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os: [ubuntu-24.04, macos-14, windows-2025]
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python-version: ["3.12", "3.13", "3.14"]
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steps:
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- name: Checkout repo
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uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
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with:
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python-version: ${{ matrix.python-version }}
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cache: pip
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- name: Install CodeEntropy and its testing dependencies
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run: |
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python -m pip install --upgrade pip
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python -m pip install -e .[testing]
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- name: Run unit test suite
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run: |
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python -m pytest tests/unit -q
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regression-quick:
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name: Quick regression (py${{ matrix.python-version }} • ${{ matrix.os }})
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needs: unit
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runs-on: ${{ matrix.os }}
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timeout-minutes: 35
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strategy:
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fail-fast: false
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matrix:
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os: [ubuntu-24.04, macos-14, windows-2025]
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python-version: ["3.12", "3.13", "3.14"]
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steps:
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- name: Checkout repo
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uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
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with:
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python-version: ${{ matrix.python-version }}
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cache: pip
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- name: Cache regression test data downloads
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uses: actions/cache@v4
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with:
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path: .testdata
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key: codeentropy-testdata-v1-${{ runner.os }}-py${{ matrix.python-version }}
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- name: Install CodeEntropy and its testing dependencies
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run: |
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python -m pip install --upgrade pip
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python -m pip install -e .[testing]
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- name: Run quick regression suite (slow excluded)
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run: |
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python -m pytest tests/regression -q
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- name: Upload regression artifacts on failure
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if: failure()
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uses: actions/upload-artifact@v4
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with:
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name: quick-regression-failure-${{ matrix.os }}-py${{ matrix.python-version }}
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path: |
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.testdata/**
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tests/regression/**/.pytest_cache/**
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/tmp/pytest-of-*/pytest-*/**/config.yaml
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/tmp/pytest-of-*/pytest-*/**/codeentropy_stdout.txt
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/tmp/pytest-of-*/pytest-*/**/codeentropy_stderr.txt
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/tmp/pytest-of-*/pytest-*/**/codeentropy_output.json
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docs:
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name: Docs build (latest)
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runs-on: ubuntu-24.04
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timeout-minutes: 25
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steps:
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- name: Checkout repo
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uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6
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- name: Set up Python 3.14
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uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
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with:
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python-version: "3.14"
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cache: pip
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- name: Install python dependencies
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run: |
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python -m pip install --upgrade pip
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python -m pip install -e .[docs]
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- name: Build docs
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run: |
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cd docs
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make
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pre-commit:
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name: Pre-commit
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runs-on: ubuntu-24.04
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timeout-minutes: 15
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steps:
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- name: Checkout repo
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uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6
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- name: Set up Python 3.14
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uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
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with:
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python-version: "3.14"
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cache: pip
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- name: Install python dependencies
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run: |
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python -m pip install --upgrade pip
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python -m pip install -e .[pre-commit]
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- name: Run pre-commit
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shell: bash
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run: |
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pre-commit install
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pre-commit run --all-files || {
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git status --short
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git diff
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exit 1
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}

‎.github/workflows/project-ci.yaml‎

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