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Expand file tree Collapse file tree Original file line number Diff line number Diff line change 1+ {
2+ "args" : {
3+ "top_traj_file" : [
4+ " ../../test_data/Liquids_simulation_data/GAFF/water/molecules.top" ,
5+ " ../../test_data/Liquids_simulation_data/GAFF/water/trajectory.crd"
6+ ],
7+ "force_file" : " ../../test_data/Liquids_simulation_data/GAFF/water/forces.frc" ,
8+ "file_format" : " MDCRD" ,
9+ "kcal_force_units" : false ,
10+ "selection_string" : " all" ,
11+ "start" : 0 ,
12+ "end" : 1 ,
13+ "step" : 1 ,
14+ "bin_width" : 30 ,
15+ "temperature" : 298.0 ,
16+ "verbose" : false ,
17+ "output_file" : " /home/tdo96567/BioSim/temp/water/job008/output_file.json" ,
18+ "force_partitioning" : 0.5 ,
19+ "water_entropy" : true ,
20+ "grouping" : " molecules" ,
21+ "combined_forcetorque" : true ,
22+ "customised_axes" : true
23+ },
24+ "provenance" : {
25+ "python" : " 3.14.0" ,
26+ "platform" : " Linux-6.6.87.2-microsoft-standard-WSL2-x86_64-with-glibc2.39" ,
27+ "codeentropy_version" : " 2.0.0" ,
28+ "git_sha" : " cba3d8ea4118e00b25ee5a58d7ba951e4894b5c0"
29+ },
30+ "groups" : {
31+ "0" : {
32+ "components" : {
33+ "united_atom:Transvibrational" : 79.20298312418278 ,
34+ "united_atom:Rovibrational" : 50.90260688502127 ,
35+ "united_atom:Conformational" : 0.0
36+ },
37+ "total" : 130.10559000920404
38+ }
39+ }
40+ }
Original file line number Diff line number Diff line change 1+ ---
2+
3+ run1 :
4+ force_file : " .testdata/water/forces.frc"
5+ top_traj_file :
6+ - " .testdata/water/molecules.top"
7+ - " .testdata/water/trajectory.crd"
8+ selection_string : " all"
9+ start : 0
10+ step : 1
11+ end : 1
12+ file_format : " MDCRD"
Original file line number Diff line number Diff line change @@ -111,6 +111,7 @@ def _compare_grouped(
111111 "methane" ,
112112 "methanol" ,
113113 pytest .param ("octonol" , marks = pytest .mark .slow ),
114+ "water" ,
114115 ],
115116)
116117def test_regression_matches_baseline (
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