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‎.buildinfo‎

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# Sphinx build info version 1
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# This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
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config: 003e580c55a3ed2c117f42f65e2c0f89
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tags: 645f666f9bcd5a90fca523b33c5a78b7

‎.nojekyll‎

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‎_sources/index.md.txt‎

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# Welcome to CCPBioSim Developer Organisation
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This GitHub organisation contains software, workshop material and many other types of repositories. These pages are aimed at developers, not users. They contain information about our development practices as well as details of which repositories are actively maintained and which are not.
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This is currently a work in progress. Over time we wish to add things like roadmaps, dashboards, docs about coding etc etc.
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```{toctree}
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---
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maxdepth: 2
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caption: Contents:
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---
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software-dash.md
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workshops-dash.md
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```
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## Indices and tables
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- {ref}`genindex`
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- {ref}`search`

‎_sources/software-dash.md.txt‎

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# Software Dashboard
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This is a dashboard overview that details the status of software projects.
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## Actively Maintained Software
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These software packages are currently being actively maintained and fulfill the onboarding requirements of long-term supported software. These software packages will have complete CI and/or CD pipelines, will recieve feature updates and bug fixes with a regular release cycle.
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| Application | Repository and CI Snapshot |
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| ----------- | -------------------------- |
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| [aiida-amber](https://github.com/CCPBioSim/aiida-amber) | [![ci](https://github.com/ccpbiosim/aiida-amber/actions/workflows/project-ci.yaml/badge.svg?branch=main)](https://github.com/ccpbiosim/aiida-amber/actions/workflows/project-ci.yaml) [![issues](https://img.shields.io/github/issues/ccpbiosim/aiida-amber?logo=github&labelColor=grey)](https://github.com/CCPBioSim/aiida-amber/issues) [![pr](https://img.shields.io/github/issues-pr/ccpbiosim/aiida-amber?logo=github&labelColor=grey)](https://github.com/CCPBioSim/aiida-amber/pulls) [![Docs - Status](https://app.readthedocs.org/projects/aiida-amber/badge/?version=latest)](https://aiida-amber.readthedocs.io/en/latest/?badge=latest) ![PyPI - Version](https://img.shields.io/pypi/v/aiida-amber?logo=pypi&logoColor=white) ![PyPI - Status](https://img.shields.io/pypi/status/aiida-amber?logo=pypi&logoColor=white) ![PyPI - Python Version](https://img.shields.io/pypi/pyversions/aiida-amber) ![PyPI - Total Downloads](https://img.shields.io/pepy/dt/aiida-amber?logo=pypi&logoColor=white&color=blue) ![PyPI - Monthly Downloads](https://img.shields.io/pypi/dm/aiida-amber?logo=pypi&logoColor=white&color=blue) [![Coverage Status](https://coveralls.io/repos/github/CCPBioSim/aiida-amber/badge.svg?branch=main)](https://coveralls.io/github/CCPBioSim/aiida-amber?branch=main) |
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| [aiida-gromacs](https://github.com/CCPBioSim/aiida-gromacs) | [![ci](https://github.com/ccpbiosim/aiida-gromacs/actions/workflows/project-ci.yaml/badge.svg?branch=main)](https://github.com/ccpbiosim/aiida-gromacs/actions/workflows/project-ci.yaml) [![issues](https://img.shields.io/github/issues/ccpbiosim/aiida-gromacs?logo=github&labelColor=grey)](https://github.com/CCPBioSim/aiida-gromacs/issues) [![pr](https://img.shields.io/github/issues-pr/ccpbiosim/aiida-gromacs?logo=github&labelColor=grey)](https://github.com/CCPBioSim/aiida-gromacs/pulls) [![Docs - Status](https://app.readthedocs.org/projects/aiida-gromacs/badge/?version=latest)](https://aiida-gromacs.readthedocs.io/en/latest/?badge=latest) ![PyPI - Version](https://img.shields.io/pypi/v/aiida-gromacs?logo=pypi&logoColor=white) ![PyPI - Status](https://img.shields.io/pypi/status/aiida-gromacs?logo=pypi&logoColor=white) ![PyPI - Python Version](https://img.shields.io/pypi/pyversions/aiida-gromacs) ![PyPI - Total Downloads](https://img.shields.io/pepy/dt/aiida-gromacs?logo=pypi&logoColor=white&color=blue) ![PyPI - Monthly Downloads](https://img.shields.io/pypi/dm/aiida-gromacs?logo=pypi&logoColor=white&color=blue) [![Coverage Status](https://coveralls.io/repos/github/CCPBioSim/aiida-gromacs/badge.svg?branch=main)](https://coveralls.io/github/CCPBioSim/aiida-gromacs?branch=main) |
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| [CodeEntropy](https://github.com/CCPBioSim/CodeEntropy/) | [![ci](https://github.com/ccpbiosim/CodeEntropy/actions/workflows/project-ci.yaml/badge.svg?branch=main)](https://github.com/ccpbiosim/CodeEntropy/actions/workflows/project-ci.yaml) [![issues](https://img.shields.io/github/issues/ccpbiosim/CodeEntropy?logo=github&labelColor=grey)](https://github.com/CCPBioSim/CodeEntropy/issues) [![pr](https://img.shields.io/github/issues-pr/ccpbiosim/CodeEntropy?logo=github&labelColor=grey)](https://github.com/CCPBioSim/CodeEntropy/pulls) [![Docs - Status](https://app.readthedocs.org/projects/codeentropy/badge/?version=latest)](https://codeentropy.readthedocs.io/en/latest/?badge=latest) ![PyPI - Version](https://img.shields.io/pypi/v/codeentropy?logo=pypi&logoColor=white) ![PyPI - Status](https://img.shields.io/pypi/status/codeentropy?logo=pypi&logoColor=white) ![PyPI - Python Version](https://img.shields.io/pypi/pyversions/CodeEntropy) ![PyPI - Total Downloads](https://img.shields.io/pepy/dt/codeentropy?logo=pypi&logoColor=white&color=blue) ![PyPI - Monthly Downloads](https://img.shields.io/pypi/dm/CodeEntropy?logo=pypi&logoColor=white&color=blue) [![Coverage Status](https://coveralls.io/repos/github/CCPBioSim/CodeEntropy/badge.svg?branch=main)](https://coveralls.io/github/CCPBioSim/CodeEntropy?branch=main) |
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## Software in Early Development/Being Addopted for Maintenance
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These packages have repositories on our organisation repository, but the code is either in early stage development or in the process of being addopted for long-term maintenance. These packages may have some CI but will not be complete and will be in active but early stage development. Releases will be more sporadic and code here might be unstable for production use.
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| Application | Repository and CI Snapshot |
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| ----------- | -------------------------- |
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| [mdprep](https://github.com/CCPBioSim/mdprep) | [![issues](https://img.shields.io/github/issues/ccpbiosim/mdprep?logo=github&labelColor=grey)](https://github.com/CCPBioSim/mdprep/issues) [![pr](https://img.shields.io/github/issues-pr/ccpbiosim/mdprep?logo=github&labelColor=grey)](https://github.com/CCPBioSim/mdprep/pulls) |
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| [Rex](https://github.com/CCPBioSim/Rex) | [![issues](https://img.shields.io/github/issues/ccpbiosim/Rex?logo=github&labelColor=grey)](https://github.com/CCPBioSim/Rex/issues) [![pr](https://img.shields.io/github/issues-pr/ccpbiosim/Rex?logo=github&labelColor=grey)](https://github.com/CCPBioSim/Rex/pulls) |
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| [SIST_code](https://github.com/CCPBioSim/SIST_code) | [![issues](https://img.shields.io/github/issues/ccpbiosim/SIST_code?logo=github&labelColor=grey)](https://github.com/CCPBioSim/SIST_code/issues) [![pr](https://img.shields.io/github/issues-pr/ccpbiosim/SIST_code?logo=github&labelColor=grey)](https://github.com/CCPBioSim/SIST_code/pulls) |
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## Specialised Apps/User/Test Environments
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These repositories contain builds or code for containerised user production or testing environments for testing other software. They are designed to ship complete environments to aid users with using complicated software, or for testing other software that have complex build environments that are unsuitable for GitHub actions.
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| Test Environment | Type | Repository and CI Snapshot |
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| ---------------- | ---- | -------------------------- |
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| [aiida-plugin-testbase](https://github.com/CCPBioSim/aiida-plugin-testbase) | Test | [![issues](https://img.shields.io/github/issues/ccpbiosim/aiida-plugin-testbase?logo=github&labelColor=grey)](https://github.com/CCPBioSim/aiida-plugin-testbase/issues) [![pr](https://img.shields.io/github/issues-pr/ccpbiosim/aiida-plugin-testbase?logo=github&labelColor=grey)](https://github.com/CCPBioSim/aiida-plugin-testbase/pulls) |
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| [aiida-with-gromacs](https://github.com/CCPBioSim/aiida-with-gromacs) | User | [![issues](https://img.shields.io/github/issues/ccpbiosim/aiida-with-gromacs?logo=github&labelColor=grey)](https://github.com/CCPBioSim/aiida-with-gromacs/issues) [![pr](https://img.shields.io/github/issues-pr/ccpbiosim/aiida-with-gromacs?logo=github&labelColor=grey)](https://github.com/CCPBioSim/aiida-with-gromacs/pulls) |
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| [chemsh-wrapper4enlighten](https://github.com/CCPBioSim/chemsh-wrapper4enlighten-plugin) | Apps | [![issues](https://img.shields.io/github/issues/ccpbiosim/chemsh-wrapper4enlighten-plugin?logo=github&labelColor=grey)](https://github.com/CCPBioSim/chemsh-wrapper4enlighten-plugin/issues) [![pr](https://img.shields.io/github/issues-pr/ccpbiosim/chemsh-wrapper4enlighten-plugin?logo=github&labelColor=grey)](https://github.com/CCPBioSim/chemsh-wrapper4enlighten-plugin/pulls) |
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## Retired Software
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These software packages have reached end of life and are no longer being actively maintained. The source will still be made available, and repositories archived.
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| Application | Reason |
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| ----------- | -------------------------- |
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| [enlighten-chemshell-wrapper](https://github.com/CCPBioSim/enlighten-chemshell-wrapper) | Retired because it has been superseded by [chemsh-wrapper4enlighten](https://github.com/CCPBioSim/chemsh-wrapper4enlighten-plugin) |
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| [FESetup](https://github.com/CCPBioSim/fesetup) | Retired because it has been superseded by [BioSimSpace](https://github.com/CCPBioSim/BioSimSpace) |

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