Update 4-CG_equilibration.ipynb

Author: jimboid

4-coarsegrain_equilibration/4-CG_equilibration.ipynb

@@ -107,11 +107,11 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "Info) VMD for LINUXAMD64, version 1.9.2 (December 29, 2014)\n",
+      "Info) for LINUXAMD64, version 1.9.2 (December 29, 2014)\n",
       "Info) http://www.ks.uiuc.edu/Research/vmd/                         \n",
       "Info) Email questions and bug reports to vmd@ks.uiuc.edu           \n",
       "Info) Please include this reference in published work using VMD:   \n",
-      "Info)    Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual   \n",
+      "Info)    Humphrey, W., Dalke, A. and Schulten, K., `- Visual   \n",
       "Info)    Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.\n",
       "Info) -------------------------------------------------------------\n",
       "Info) Multithreading available, 24 CPUs detected.\n",
@@ -146,15 +146,15 @@
       "Info)    Fragments: 18062   Protein: 0   Nucleic: 0\n",
       "after#0\n",
       "Material23\n",
-      "Info) VMD for LINUXAMD64, version 1.9.2 (December 29, 2014)\n",
+      "Info) for LINUXAMD64, version 1.9.2 (December 29, 2014)\n",
       "Info) Exiting normally.\n"
      ]
     }
    ],
    "source": [
     "%%bash\n",
     "\n",
-    "vmd output_initial_state.pdb"
+    "output_initial_state.pdb"
    ]
   },
   {
@@ -3473,6 +3473,9 @@
    "execution_count": null,
    "id": "a417bb34",
    "metadata": {
+    "tags": [
+      "skip-execution"
+    ],
     "vscode": {
      "languageId": "shellscript"
     }