add biosim build system for cloud #1

	name: CI

	concurrency:
	group: ${{ github.ref }}
	cancel-in-progress: true

	on:
	push: { branches: [ "main" ] }
	pull_request: { branches: [ "main" ] }

	jobs:
	test:

	runs-on: ubuntu-latest
	container: condaforge/mambaforge:latest

	steps:
	- uses: actions/checkout@v4

	- name: Run CI
	run: \|
	apt update && apt install -y git make

	make env-dev
	make run-nb-and-convert-to-md

	- name: Commit and push notebook.md files
	run: \|
	git config --global --add safe.directory "$GITHUB_WORKSPACE"
	git config --global user.name "github-actions[bot]"
	git config --global user.email "github-actions[bot]@users.noreply.github.com"
	git add notebooks-rendered/
	git commit -m "Add generated notebook.md files [skip ci]" \|\| echo "No changes to commit"
	git push
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

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