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fix: segment issue in hgf_ibrb
1 parent ae9d939 commit 2bcea62

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Lines changed: 20 additions & 7 deletions

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commons/stan_files/hgf_ibrb.stan

Lines changed: 20 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -103,19 +103,32 @@ parameters {
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transformed parameters {
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// group-level parameters
106-
vector[n_free_kappa] mu_kappa_pr = segment(mu_pr, 1, n_free_kappa);
107-
vector[n_free_omega] mu_omega_pr = segment(mu_pr, 1+n_free_kappa, n_free_omega);
108-
vector[n_free_zeta] mu_zeta_pr = segment(mu_pr, 1+n_free_parameters-n_free_zeta, n_free_zeta);
109-
110-
vector<lower=0>[n_free_kappa] kappa_sigma_pr = segment(sigma, 1, n_free_kappa);
111-
vector<lower=0>[n_free_omega] omega_sigma_pr = segment(sigma, 1+n_free_kappa, n_free_omega);
112-
vector<lower=0>[n_free_zeta] zeta_sigma_pr = segment(sigma, 1+n_free_parameters-n_free_zeta, n_free_zeta);
106+
vector[n_free_kappa] mu_kappa_pr;
107+
vector[n_free_omega] mu_omega_pr;
108+
vector[n_free_zeta] mu_zeta_pr;
109+
110+
vector<lower=0>[n_free_kappa] kappa_sigma_pr;
111+
vector<lower=0>[n_free_omega] omega_sigma_pr;
112+
vector<lower=0>[n_free_zeta] zeta_sigma_pr;
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// subject-level parameters
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matrix[N,L-2] kappa;
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matrix[N,L-1] omega;
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vector[N] zeta;
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119+
if (n_free_kappa > 0) {
120+
mu_kappa_pr = segment(mu_pr, 1, n_free_kappa);
121+
kappa_sigma_pr = segment(sigma, 1, n_free_kappa);
122+
}
123+
if (n_free_omega > 0) {
124+
mu_omega_pr = segment(mu_pr, 1+n_free_kappa, n_free_omega);
125+
omega_sigma_pr = segment(sigma, 1+n_free_kappa, n_free_omega);
126+
}
127+
if (n_free_zeta == 1) {
128+
mu_zeta_pr = segment(mu_pr, 1+n_free_kappa+n_free_omega, n_free_zeta);
129+
zeta_sigma_pr = segment(sigma, 1+n_free_kappa+n_free_omega, n_free_zeta);
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}
131+
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// Rebuild parameters with sampled values and fixed values & Non-centered parameterization
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if (n_free_kappa > 0) {
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for (i in 1:n_free_kappa) {

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