Releases: CDCgov/dibbs-text-to-code
Releases · CDCgov/dibbs-text-to-code
v0.2.1
Immutable
release. Only release title and notes can be modified.
What's Changed
- eicr_augmenter coverage update by @robertandremitchell in #561
- refactor: Simplify get_relevant_text by getting the criteria itself by @JNygaard-Skylight in #557
- build(deps): bump actions/upload-artifact from 4 to 7 by @dependabot[bot] in #566
- build(deps): bump actions/checkout from 4 to 6 by @dependabot[bot] in #567
- Add TF Config and Index Lambda Extension by @bamader in #546
- Expanding augmentation lambda README by @robertandremitchell in #565
- Drop gcc-c++ from Lambda images to remove HIGH CVEs by @nickclyde in #571
- Adding code so eicr always flows to augmentation by @robertandremitchell in #559
- Create result cache service by @bamader in #562
- style: remove force-single-line by @JNygaard-Skylight in #575
- Release v0.2.1 by @nickclyde in #576
Full Changelog: v0.2.0...v0.2.1
v0.2.0
Immutable
release. Only release title and notes can be modified.
What's Changed
- Update README, CODEOWNERS, & add .gitignore and pull request template by @m-goggins in #1
- automations by @ericbuckley in #11
- remove trailing commas by @ericbuckley in #12
- dockerfile release by @ericbuckley in #31
- generate synthetic lab results script by @ericbuckley in #33
- Version 3.12, add NLP by @bamader in #42
- Add function to retrieve manifest data by @m-goggins in #44
- Update CODEOWNERS + PR template by @m-goggins in #45
- Create script to grab valuesets and store them in CSV files for TTC Model by @BradySkylight in #41
- S3 handler module with put_object by @ericbuckley in #48
- Added additional terms for the various Loinc Lab Codes by @BradySkylight in #70
- Add word-level scrambler function by @m-goggins in #72
- Update Medical Terminology Extract Script by @BradySkylight in #75
- Add function to insert LOINC related names by @m-goggins in #73
- Update repo structure by @m-goggins in #78
- Update release workflow to match new repo structure by @m-goggins in #79
- Create TSDAE data by @bamader in #74
- Create evaluation script by @bamader in #77
- Fix dev_scripts path by @m-goggins in #81
- LOINC Random Character/Word Deletion Function by @BradySkylight in #71
- Attempt to fix GitHub Actions Deployment Flow Failure by @BradySkylight in #83
- Create script to generate LOINC Part Enhancement Files - Dictionaries per LOINC Part Axis containing the Part and it's abbreviations & synonyms by @BradySkylight in #80
- Generate positive pairs by @bamader in #87
- Add LOINC enhancement function by @m-goggins in #89
- Write generate_augmented_examples function by @bamader in #84
- Add UMLS Related names for all LOINC codes to a data curation file by @BradySkylight in #90
- Add function to build augmented LOINC data files for testing by @m-goggins in #91
- Update Data Curation and Data README.md files with proper documentation by @BradySkylight in #98
- Fixes for running performance by @m-goggins in #92
- Fixed bug with spaces and newlines in loinc text by @BradySkylight in #101
- Create LOINC Data Files and Validation Positive Pairs by @bamader in #102
- Add additional valueset extracts for other eICR Fields by @BradySkylight in #113
- Incorporate ANN by @bamader in #119
- Create azure performance script by @bamader in #121
- Add Azure ML Environment file by @m-goggins in #123
- refactor: Initial Repo refactor for frontend by @JNygaard-Skylight in #118
- Add AWS-Opensearch to docker file - Using the new Project Structure by @BradySkylight in #130
- Add embedding notebook by @bamader in #125
- Add Rob as CODEOWNER by @m-goggins in #138
- feat: Front end components and styling by @JNygaard-Skylight in #127
- Add db_setup file for Azure by @m-goggins in #124
- style: Prettier by @JNygaard-Skylight in #139
- Add LOINC Lab Type to Extracts by @BradySkylight in #143
- Create Notebook to add LOINC Lab Type to the existing embedding files in Azure by @BradySkylight in #154
- Creating jsonl embeddings by @robertandremitchell in #153
- Update to LOINC Lab Type Notebook by @BradySkylight in #161
- chore: Publish to GHCR by @JNygaard-Skylight in #151
- chore: fix script name by @JNygaard-Skylight in #162
- chore: Update dockerfile.app by @JNygaard-Skylight in #163
- chore: create requirements.txt in dockerfile.app by @JNygaard-Skylight in #165
- Rob/160 spike accuracy of valueset inclusion by @robertandremitchell in #167
- Fix embeddings with empty 'code' element - add loinc types to all embeddings - split embeddings by @BradySkylight in #170
- install uv in docker by @JNygaard-Skylight in #178
- build: dockerfile fixes by @JNygaard-Skylight in #181
- Add Basic Configuration and Test for Text Viability, by Data Element, for TTC evaluation by @BradySkylight in #179
- feature: Embed Service by @JNygaard-Skylight in #182
- Extract Schematron Errors for TTC data fields of interest from APHL Schematron Output by @BradySkylight in #189
- Get text candidates from an eICR message using the Schematron Error data as well as configured xpaths by @BradySkylight in #190
- refactor: Additional Ruff rules and reorganization of core TTC code. by @JNygaard-Skylight in #195
- Bump react-router from 7.9.5 to 7.12.0 by @dependabot[bot] in #196
- feature: Resolve references by @JNygaard-Skylight in #197
- Introduce pydantic for lab schemas by @m-goggins in #215
- Bump virtualenv from 20.35.4 to 20.36.1 by @dependabot[bot] in #217
- Bump starlette from 0.49.0 to 0.49.1 by @dependabot[bot] in #216
- Bump urllib3 from 2.5.0 to 2.6.3 by @dependabot[bot] in #219
- Bump werkzeug from 3.1.3 to 3.1.5 by @dependabot[bot] in #220
- Add TSDAE Notebook, Update Others by @bamader in #204
- chore: Update Dependabot config to be more chill by @JNygaard-Skylight in #222
- Add basic structures/folders for augmentation work by @BradySkylight in #234
- refactor: Refactor EicrProcessor into class by @JNygaard-Skylight in #199
- Bump actions/checkout from 4 to 6 by @dependabot[bot] in #226
- Bump astral-sh/setup-uv from 6 to 7 by @dependabot[bot] in #227
- Bump ty from 0.0.10 to 0.0.13 by @dependabot[bot] in #228
- Bump pydantic from 2.12.3 to 2.12.5 by @dependabot[bot] in #229
- Bump react and @types/react by @dependabot[bot] in #230
- Bump node from 22-alpine3.22 to 25-alpine3.22 by @dependabot[bot] in #233
- Create function to assess valueset accuracy by @robertandremitchell in #175
- Bump @vitest/coverage-v8 from 3.2.4 to 4.0.18 by @dependabot[bot] in #231
- Bump python-multipart from 0.0.20 to 0.0.22 by @dependabot[bot] in #236
- Bump actions/setup-python from 5 to 6 by @dependabot[bot] in #238
- Bump python from 3.12-slim to 3.14-slim by @dependabot[bot] in #240
- Bump docker/login-action from 2 to 3 by @dependabot[bot] in #239
- Create HNM Script by @bamader in #237
- Bump ruff from 0.14.10 to 0.14.14 by @dependabot[bot] in https://github.com/CDCgov/dib...