added new tools and ran updates

Author: hechth

galaxy-umsa.grid.cesnet.cz/ipapy2.yml

@@ -0,0 +1,18 @@
+tool_panel_section_label: ipapy2
+tools:
+- name: ipapy2_clustering
+  owner: recetox
+- name: ipapy2_compute_all_adducts
+  owner: recetox
+- name: ipapy2_compute_bio
+  owner: recetox
+- name: ipapy2_gibbs_sampler_add
+  owner: recetox
+- name: ipapy2_gibbs_sampler
+  owner: recetox
+- name: ipapy2_map_isotope_patterns
+  owner: recetox
+- name: ipapy2_MS1_annotation
+  owner: recetox
+- name: ipapy2_MS2_annotation
+  owner: recetox

galaxy-umsa.grid.cesnet.cz/ipapy2.yml.lock

@@ -0,0 +1,51 @@
+install_repository_dependencies: true
+install_resolver_dependencies: false
+install_tool_dependencies: false
+tool_panel_section_label: ipapy2
+tools:
+- name: ipapy2_clustering
+  owner: recetox
+  revisions:
+  - cb18b8fcb441
+  tool_panel_section_id: ipapy2
+  tool_panel_section_label: ipapy2
+- name: ipapy2_compute_all_adducts
+  owner: recetox
+  revisions:
+  - f85a6d4e44b0
+  tool_panel_section_id: ipapy2
+  tool_panel_section_label: ipapy2
+- name: ipapy2_compute_bio
+  owner: recetox
+  revisions:
+  - ca72f5330bc9
+  tool_panel_section_id: ipapy2
+  tool_panel_section_label: ipapy2
+- name: ipapy2_gibbs_sampler_add
+  owner: recetox
+  revisions:
+  - 428abc41a101
+  tool_panel_section_id: ipapy2
+  tool_panel_section_label: ipapy2
+- name: ipapy2_gibbs_sampler
+  owner: recetox
+  revisions:
+  - b2253cf7db76
+  tool_panel_section_id: ipapy2
+  tool_panel_section_label: ipapy2
+- name: ipapy2_map_isotope_patterns
+  owner: recetox
+  revisions:
+  - 774152f21f29
+  tool_panel_section_id: ipapy2
+  tool_panel_section_label: ipapy2
+- name: ipapy2_MS1_annotation
+  owner: recetox
+  revisions: []
+  tool_panel_section_id: ipapy2
+  tool_panel_section_label: ipapy2
+- name: ipapy2_MS2_annotation
+  owner: recetox
+  revisions: []
+  tool_panel_section_id: ipapy2
+  tool_panel_section_label: ipapy2

galaxy-umsa.grid.cesnet.cz/matchms.yml.lock

@@ -6,6 +6,7 @@ tools:
   owner: recetox
   revisions:
   - 5bbd1a8404f5
+  - 6ac4a790adad
   - a598091029ad
   - cab0e4dcf372
   tool_panel_section_id: matchms
@@ -14,13 +15,15 @@ tools:
   owner: recetox
   revisions:
   - 1fd950c5586a
+  - e23c14cee5a9
   - ec25de0f0c58
   - fc1a698a71e8
   tool_panel_section_id: matchms
   tool_panel_section_label: matchms
 - name: matchms_add_key
   owner: recetox
   revisions:
+  - 081390a8e739
   - 51da674b945d
   - 7c5b86026e57
   - a5d41764722d
@@ -29,6 +32,7 @@ tools:
 - name: matchms_networking
   owner: recetox
   revisions:
+  - 131baa30af82
   - 3cd1cf3034d1
   - ab8a33c370f5
   - f04b378325e5
@@ -40,19 +44,22 @@ tools:
   - 05a7fc94e66c
   - 330b0dfae8da
   - 844d32c59314
+  - c86d265f6f5e
   tool_panel_section_id: matchms
   tool_panel_section_label: matchms
 - name: matchms_spectral_similarity
   owner: recetox
   revisions:
   - 26c92af1bd28
   - 44e7027714d7
+  - 77d6425daa07
   - 7ba589b01dbc
   tool_panel_section_id: matchms
   tool_panel_section_label: matchms
 - name: matchms_metadata_export
   owner: recetox
   revisions:
+  - 51205379251d
   - 8832425b1ff6
   - cbadbec49b5d
   - dd49ef90297c
@@ -64,11 +71,13 @@ tools:
   - 1d3ee4f9f63d
   - ad9d2d1b2b8d
   - fd890f162ce6
+  - fe9f3cd0b8dd
   tool_panel_section_id: matchms
   tool_panel_section_label: matchms
 - name: matchms_convert
   owner: recetox
   revisions:
+  - 50836782d36f
   - 692471e62c68
   - 9e83636da9d3
   - bff7bfcf975e
@@ -79,13 +88,15 @@ tools:
   revisions:
   - 07cac38cbd29
   - 83c4b4359ac4
+  - a6583110825c
   - da15e8ea3b28
   tool_panel_section_id: matchms
   tool_panel_section_label: matchms
 - name: matchms_split
   owner: recetox
   revisions:
   - 446fddefcee7
+  - 6864944b00fd
   - ea6c5636c0cf
   - fc1bc38ede0b
   tool_panel_section_id: matchms
@@ -94,13 +105,15 @@ tools:
   owner: recetox
   revisions:
   - 0a64e2bcce96
+  - 10908b5bb7c8
   - 19367db5cf3c
   - fbdb2ae524df
   tool_panel_section_id: matchms
   tool_panel_section_label: matchms
 - name: matchms_formatter
   owner: recetox
   revisions:
+  - 604131c54f97
   - 6501d0287dcd
   - a5a5b147da70
   - f76a397afbe1
@@ -109,6 +122,7 @@ tools:
 - name: matchms_remove_spectra
   owner: recetox
   revisions:
+  - 6fa0150f6172
   - 80df426e7e47
   - c24ebd41dd53
   - d50ce2f51fc0
@@ -117,6 +131,7 @@ tools:
 - name: matchms_matchms_export_skyline_transition_list
   owner: recetox
   revisions:
+  - 535eadf882a3
   - 8aa0014a5ad4
   tool_panel_section_id: matchms
   tool_panel_section_label: matchms

galaxy-umsa.grid.cesnet.cz/pre_processing.yml

@@ -5,4 +5,6 @@ tools:
 - name: bioconductor_msnbase_smooth_chromatogram
   owner: recetox
 - name: bioconductor_msnbase_smooth_mz
+  owner: receto
+- name: bioconductor_mzr
   owner: recetox

galaxy-umsa.grid.cesnet.cz/recetox.yml

@@ -46,3 +46,13 @@ tools:
   owner: recetox
 - name: isolib
   owner: recetox
+- name: wtv
+  owner: recetox
+- name: mzspeclib_convert
+  owner: recetox
+- name: mzspeclib_describe
+  owner: recetox
+- name: mzspeclib_validate
+  owner: recetox
+- name: mztabm_validate
+  owner: recetox

galaxy-umsa.grid.cesnet.cz/recetox.yml.lock

@@ -21,6 +21,7 @@ tools:
   owner: recetox
   revisions:
   - 3e2cb0bc6959
+  - 646ef66527da
   - b5467dead5b1
   tool_panel_section_id: recetox
   tool_panel_section_label: RECETOX
@@ -45,6 +46,7 @@ tools:
   - 071a424241ec
   - 1a2aeb8137bf
   - 6480c6d5fa36
+  - 821062fc5782
   - bf32ae95a06f
   tool_panel_section_id: recetox
   tool_panel_section_label: RECETOX
@@ -53,6 +55,7 @@ tools:
   revisions:
   - 050cfef6ba65
   - da7722f665f4
+  - f52181a205d3
   tool_panel_section_id: recetox
   tool_panel_section_label: RECETOX
 - name: rmassbank
@@ -89,6 +92,7 @@ tools:
   owner: recetox
   revisions:
   - 25625114618e
+  - ef3cbcdf5f5d
   - f2c1d0bbb074
   tool_panel_section_id: recetox
   tool_panel_section_label: RECETOX
@@ -103,6 +107,7 @@ tools:
   owner: galaxyp
   revisions:
   - 19e45916daf9
+  - 5c04f9decc01
   tool_panel_section_id: recetox
   tool_panel_section_label: RECETOX
 - name: assign_ri_from_comment
@@ -129,6 +134,7 @@ tools:
   owner: recetox
   revisions:
   - 54401f9d1a30
+  - 9b4b624c4d60
   tool_panel_section_id: recetox
   tool_panel_section_label: RECETOX
 - name: ms2deepscore_config_generator
@@ -159,6 +165,7 @@ tools:
 - name: isolib
   owner: recetox
   revisions:
+  - 06f2d0d6d107
   - 2b1118bce0b1
   tool_panel_section_id: recetox
   tool_panel_section_label: RECETOX

galaxy-umsa.grid.cesnet.cz/statistics.yml.lock

@@ -5,6 +5,7 @@ tools:
 - name: intensity_checks
   owner: melpetera
   revisions:
+  - 2e580585782e
   - ec75de7f1e08
   tool_panel_section_id: statistics
   tool_panel_section_label: Statistics

galaxy-umsa.grid.cesnet.cz/text_manipulation.yml.lock

@@ -6,6 +6,7 @@ tools:
   owner: iuc
   revisions:
   - 22c2a1ac7ae3
+  - a2667f8d23de
   - a513e3fbb4c5
   tool_panel_section_id: text_manipulation
   tool_panel_section_label: Text Manipulation
@@ -23,6 +24,7 @@ tools:
   revisions:
   - 6073bb457ec0
   - 86755160afbf
+  - c41d78ae5fee
   - ddf54b12c295
   tool_panel_section_id: text_manipulation
   tool_panel_section_label: Text Manipulation
@@ -31,5 +33,6 @@ tools:
   revisions:
   - 3bf5661c0280
   - 56a8da1f2243
+  - cd36d6e45e29
   tool_panel_section_id: text_manipulation
   tool_panel_section_label: Text Manipulation

galaxy-umsa.grid.cesnet.cz/visualization.yml.lock

@@ -13,20 +13,23 @@ tools:
   revisions:
   - 0e7290688b50
   - 17b666467c32
+  - 63d211052ffb
   - dfd5d981b5a4
   tool_panel_section_id: visualization
   tool_panel_section_label: Visualization
 - name: ggplot2_heatmap
   owner: iuc
   revisions:
   - 10515715c940
+  - 15cebddc6dba
   - 1a72f938213e
   - 391a4cc45fea
   tool_panel_section_id: visualization
   tool_panel_section_label: Visualization
 - name: ggplot2_pca
   owner: iuc
   revisions:
+  - 1df3b30325dd
   - 7e616a1bdb07
   - ae344ccf9d62
   - b1268b7544d3
@@ -36,6 +39,7 @@ tools:
   owner: iuc
   revisions:
   - 398e5104f8a2
+  - 6b9816a913de
   - 6fc8bab811da
   - b0d96516e6a5
   tool_panel_section_id: visualization
@@ -54,6 +58,7 @@ tools:
   revisions:
   - 5298e06f14f9
   - e3a675da7fd0
+  - f87634b12749
   tool_panel_section_id: visualization
   tool_panel_section_label: Visualization
 - name: rcx_boxplot
@@ -72,11 +77,13 @@ tools:
   owner: workflow4metabolomics
   revisions:
   - 51015f22fcb7
+  - cbedca3ba6e1
   tool_panel_section_id: visualization
   tool_panel_section_label: Visualization
 - name: xcms_plot_raw
   owner: workflow4metabolomics
   revisions:
   - 520448a32548
+  - 8b8d360316c3
   tool_panel_section_id: visualization
   tool_panel_section_label: Visualization

galaxy-umsa.grid.cesnet.cz/w4m.yml.lock

@@ -12,6 +12,7 @@ tools:
 - name: qualitymetrics
   owner: ethevenot
   revisions:
+  - 25c9349d1be9
   - acdf51018708
   tool_panel_section_id: w4m
   tool_panel_section_label: W4M