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martensonmartenson
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Merge pull request #48 from CESNET/drop-cpt
GCZ - drop all cpt tools
2 parents 606c0c3 + d00c802 commit 64801f8

16 files changed

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‎galaxy-qa1.galaxy.cloud.e-infra.cz/annotation.yml‎

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owner: bgruening
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- name: pfamscan
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owner: bgruening
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- name: cpt_phageqc_annotations
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owner: cpt
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- name: cpt_intron_detection
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owner: cpt
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- name: cpt_gbk_renumber
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owner: cpt
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- name: cpt_require_shine
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owner: cpt
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- name: tb_variant_filter
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owner: iuc
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- name: pharokka
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owner: iuc
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- name: cpt_gff_add_parents
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owner: cpt
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- name: cpt_remove_annotations
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owner: cpt
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- name: cpt_prep_for_apollo
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owner: cpt
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- name: funannotate_predict
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owner: iuc
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- name: funannotate_compare

‎galaxy-qa1.galaxy.cloud.e-infra.cz/annotation.yml.lock‎

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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_phageqc_annotations
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owner: cpt
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revisions:
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- c3140b08d703
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_intron_detection
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owner: cpt
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revisions:
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_gbk_renumber
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owner: cpt
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revisions:
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- 8cac332dbc77
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_require_shine
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owner: cpt
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revisions:
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- a6dc48930318
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: tb_variant_filter
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owner: iuc
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_gff_add_parents
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owner: cpt
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_remove_annotations
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owner: cpt
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revisions:
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_prep_for_apollo
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owner: cpt
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revisions:
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: funannotate_predict
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owner: iuc
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‎galaxy-qa1.galaxy.cloud.e-infra.cz/fasta_fastq.yml‎

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owner: devteam
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- name: fastx_barcode_splitter
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owner: devteam
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- name: cpt_fasta_remove_id
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owner: cpt

‎galaxy-qa1.galaxy.cloud.e-infra.cz/fasta_fastq.yml.lock‎

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tool_panel_section_id: fasta_fastq
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tool_panel_section_label: FASTA/FASTQ
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- name: cpt_fasta_remove_id
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owner: cpt
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revisions:
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tool_panel_section_id: fasta_fastq
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tool_panel_section_label: FASTA/FASTQ

‎galaxy-qa1.galaxy.cloud.e-infra.cz/phylogenetics.yml‎

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- name: snp_dists
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- name: cpt_related_genomes_nuc
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owner: cpt
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- name: cpt_xmfa_to_table
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owner: cpt

‎galaxy-qa1.galaxy.cloud.e-infra.cz/phylogenetics.yml.lock‎

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tool_panel_section_id: phylogenetics
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tool_panel_section_label: Phylogenetics
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- name: cpt_related_genomes_nuc
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owner: cpt
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revisions:
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tool_panel_section_id: phylogenetics
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tool_panel_section_label: Phylogenetics
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- name: cpt_xmfa_to_table
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owner: cpt
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revisions:
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tool_panel_section_id: phylogenetics
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tool_panel_section_label: Phylogenetics
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‎usegalaxy.cz/annotation.yml‎

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owner: iuc
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- name: braker3
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- name: cpt_phageqc_annotations
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- name: cpt_gff_extract_seq
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owner: cpt
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- name: cpt_intron_detection
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- name: cpt_lipory
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- name: cpt_gbk_renumber
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- name: cpt_genome_editor
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- name: cpt_annotation_table
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owner: cpt
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- name: cpt_gff_rebase
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- name: cpt_require_shine
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- name: cpt_get_orfs
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- name: cpt_gff_add_parents
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owner: cpt
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- name: cpt_fix_sixpack
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owner: cpt
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- name: cpt_shinefind
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owner: cpt
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- name: cpt_type_filter
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owner: cpt
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- name: cpt_req_phage_start
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owner: cpt
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- name: cpt_remove_annotations
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owner: cpt
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- name: cpt_prep_for_apollo
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owner: cpt
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- name: cpt_convert_glimmer
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owner: cpt
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- name: agat
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owner: bgruening
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- name: helixer
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owner: genouest
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- name: hmmer3
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owner: iuc
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- name: cpt_intersect_adjacent
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- name: blast2go
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owner: peterjc
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- name: funannotate_predict

‎usegalaxy.cz/annotation.yml.lock‎

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tool_panel_section_id: annotation
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- name: cpt_phageqc_annotations
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owner: cpt
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tool_panel_section_id: annotation
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- name: cpt_gff_extract_seq
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tool_panel_section_id: annotation
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- name: cpt_intron_detection
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owner: cpt
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tool_panel_section_id: annotation
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- name: cpt_lipory
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tool_panel_section_id: annotation
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- name: cpt_gbk_renumber
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owner: cpt
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- 8cac332dbc77
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_genome_editor
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owner: cpt
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- 0e8079ac24f8
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tool_panel_section_id: annotation
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- name: cpt_annotation_table
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owner: cpt
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- 6998c2570145
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- 848dd74f4382
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_gff_rebase
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owner: cpt
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_require_shine
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owner: cpt
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- a6dc48930318
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_get_orfs
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- f56389d8abda
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_gff_add_parents
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owner: cpt
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- d839cfd1c3a6
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_fix_sixpack
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owner: cpt
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- 326429ea1d33
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- e23a13d56fce
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_shinefind
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owner: cpt
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- 6a5aac2a4c89
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- 75f99d20c2a2
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_type_filter
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owner: cpt
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- d40c9632250f
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tool_panel_section_id: annotation
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- name: cpt_req_phage_start
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owner: cpt
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tool_panel_section_id: annotation
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- name: cpt_remove_annotations
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owner: cpt
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tool_panel_section_id: annotation
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- name: cpt_prep_for_apollo
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owner: cpt
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_convert_glimmer
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owner: cpt
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- name: agat
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owner: bgruening
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: cpt_intersect_adjacent
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owner: cpt
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tool_panel_section_id: annotation
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- name: blast2go
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owner: peterjc
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‎usegalaxy.cz/convert_formats.yml‎

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- name: xmlstarlet
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- name: cpt_gff_split
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- name: cpt_gbk_to_5col
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- name: cpt_gff_to_gbk
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- name: cpt_gbk_to_gff
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- name: cpt_convert_mga
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- name: cpt_fix_aragorn
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‎usegalaxy.cz/convert_formats.yml.lock‎

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tool_panel_section_id: convert_formats
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tool_panel_section_label: Convert Formats
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- name: cpt_gff_split
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owner: cpt
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revisions:
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tool_panel_section_id: convert_formats
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- name: cpt_gbk_to_5col
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owner: cpt
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revisions:
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tool_panel_section_id: convert_formats
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- name: cpt_gff_to_gbk
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tool_panel_section_id: convert_formats
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- name: cpt_gbk_to_gff
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tool_panel_section_id: convert_formats
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tool_panel_section_label: Convert Formats
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- name: cpt_convert_mga
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tool_panel_section_id: convert_formats
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- name: cpt_fix_aragorn
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tool_panel_section_id: convert_formats
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tool_panel_section_label: Convert Formats
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tool_panel_section_label: Convert Formats

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