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Added visualization tools and slight rearrangements #41

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Merged
martenson merged 4 commits into from
May 19, 2025
Merged

Added visualization tools and slight rearrangements #41

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f86534b
Added script to update all tools
hechth May 19, 2025
b7f19b7
updated and moved tools
hechth May 19, 2025
e6766f0
added missing revision
hechth May 19, 2025
80ac827
fixed missing : and removed script
hechth May 19, 2025
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4 changes: 0 additions & 4 deletions galaxy-umsa.grid.cesnet.cz/post_processing.yml
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10 changes: 0 additions & 10 deletions galaxy-umsa.grid.cesnet.cz/post_processing.yml.lock
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3 changes: 3 additions & 0 deletions galaxy-umsa.grid.cesnet.cz/recetox.yml.lock
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Expand Up @@ -45,6 +45,7 @@ tools:
- 071a424241ec
- 1a2aeb8137bf
- 6480c6d5fa36
- 6fc9f6dbcef5
- bf32ae95a06f
tool_panel_section_id: recetox
tool_panel_section_label: RECETOX
Expand Down Expand Up @@ -103,6 +104,7 @@ tools:
owner: galaxyp
revisions:
- 19e45916daf9
- 5c04f9decc01
tool_panel_section_id: recetox
tool_panel_section_label: RECETOX
- name: assign_ri_from_comment
Expand Down Expand Up @@ -160,5 +162,6 @@ tools:
owner: recetox
revisions:
- 2b1118bce0b1
- 964b4559eb1b
tool_panel_section_id: recetox
tool_panel_section_label: RECETOX
12 changes: 12 additions & 0 deletions galaxy-umsa.grid.cesnet.cz/visualization.yml
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Expand Up @@ -14,6 +14,18 @@ tools:
owner: iuc
- name: ggplot2_point
owner: iuc
- name: ggplot2_boxplot
owner: iuc
- name: ggplot2_barplot
owner: iuc
- name: seaborn
owner: iuc
- name: seaborn_pairgrid
owner: iuc
- name: upsetplot
owner: iuc
- name: maplot
owner: iuc
- name: rcx_boxplot
owner: recetox
- name: heatmap
Expand Down
43 changes: 43 additions & 0 deletions galaxy-umsa.grid.cesnet.cz/visualization.yml.lock
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Expand Up @@ -13,20 +13,23 @@ tools:
revisions:
- 0e7290688b50
- 17b666467c32
- 63d211052ffb
- dfd5d981b5a4
tool_panel_section_id: visualization
tool_panel_section_label: Visualization
- name: ggplot2_heatmap
owner: iuc
revisions:
- 10515715c940
- 15cebddc6dba
- 1a72f938213e
- 391a4cc45fea
tool_panel_section_id: visualization
tool_panel_section_label: Visualization
- name: ggplot2_pca
owner: iuc
revisions:
- 1df3b30325dd
- 7e616a1bdb07
- ae344ccf9d62
- b1268b7544d3
Expand All @@ -36,6 +39,7 @@ tools:
owner: iuc
revisions:
- 398e5104f8a2
- 6b9816a913de
- 6fc8bab811da
- b0d96516e6a5
tool_panel_section_id: visualization
Expand All @@ -54,6 +58,43 @@ tools:
revisions:
- 5298e06f14f9
- e3a675da7fd0
- f87634b12749
tool_panel_section_id: visualization
tool_panel_section_label: Visualization
- name: ggplot2_boxplot
owner: iuc
revisions:
- 653803fab921
tool_panel_section_id: visualization
tool_panel_section_label: Visualization
- name: ggplot2_barplot
owner: iuc
revisions:
- 41e9114cc7cd
tool_panel_section_id: visualization
tool_panel_section_label: Visualization
- name: seaborn
owner: iuc
revisions:
- 293a939f28c8
tool_panel_section_id: visualization
tool_panel_section_label: Visualization
- name: seaborn_pairgrid
owner: iuc
revisions:
- 4a46d83cb08f
tool_panel_section_id: visualization
tool_panel_section_label: Visualization
- name: upsetplot
owner: iuc
revisions:
- ec6141f6e5cb
tool_panel_section_id: visualization
tool_panel_section_label: Visualization
- name: maplot
owner: iuc
revisions:
- e9212adafd7a
tool_panel_section_id: visualization
tool_panel_section_label: Visualization
- name: rcx_boxplot
Expand All @@ -72,11 +113,13 @@ tools:
owner: workflow4metabolomics
revisions:
- 51015f22fcb7
- cbedca3ba6e1
tool_panel_section_id: visualization
tool_panel_section_label: Visualization
- name: xcms_plot_raw
owner: workflow4metabolomics
revisions:
- 520448a32548
- 8b8d360316c3
tool_panel_section_id: visualization
tool_panel_section_label: Visualization
6 changes: 4 additions & 2 deletions galaxy-umsa.grid.cesnet.cz/w4m.yml
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@@ -1,10 +1,12 @@
tool_panel_section_label: W4M
tools:
- name: xcms_refine
owner: workflow4metabolomics
- name: qualitymetrics
owner: ethevenot
- name: bank_inhouse
owner: fgiacomoni
- name: batchcorrection
owner: melpetera
- name: tablemerge
owner: melpetera
- name: checkformat
owner: ethevenot
19 changes: 12 additions & 7 deletions galaxy-umsa.grid.cesnet.cz/w4m.yml.lock
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Expand Up @@ -2,13 +2,6 @@ install_repository_dependencies: true
install_resolver_dependencies: false
install_tool_dependencies: false
tools:
- name: xcms_refine
owner: workflow4metabolomics
revisions:
- 090b33a9981c
- 6c2798bce3eb
tool_panel_section_id: w4m
tool_panel_section_label: W4M
- name: qualitymetrics
owner: ethevenot
revisions:
Expand All @@ -27,3 +20,15 @@ tools:
- 23314e1192d4
tool_panel_section_id: w4m
tool_panel_section_label: W4M
- name: tablemerge
owner: melpetera
revisions:
- e44c5246247a
tool_panel_section_id: w4m
tool_panel_section_label: W4M
- name: checkformat
owner: ethevenot
revisions:
- e7c5811ec12f
tool_panel_section_id: w4m
tool_panel_section_label: W4M
2 changes: 2 additions & 0 deletions galaxy-umsa.grid.cesnet.cz/xcms.yml
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Expand Up @@ -18,3 +18,5 @@ tools:
owner: lecorguille
- name: xcms_export_samplemetadata
owner: lecorguille
- name: xcms_refine
owner: workflow4metabolomics
7 changes: 7 additions & 0 deletions galaxy-umsa.grid.cesnet.cz/xcms.yml.lock
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Expand Up @@ -74,3 +74,10 @@ tools:
- e13c7bc91c63
tool_panel_section_id: xcms
tool_panel_section_label: XCMS
- name: xcms_refine
owner: workflow4metabolomics
revisions:
- 090b33a9981c
- 6c2798bce3eb
tool_panel_section_id: xcms
tool_panel_section_label: XCMS