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added new tools and ran updates #64

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Merged
martenson merged 4 commits into from
Jul 17, 2025
Merged

added new tools and ran updates #64

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12dcb61
added new tools and ran updates
hechth Jul 16, 2025
c1353bc
Merge branch 'main' into 20250716_hechth_tool_additions
hechth Jul 16, 2025
ade7d69
fix
hechth Jul 16, 2025
0ce43a5
fixed the ipapy2 annotation tools
hechth Jul 16, 2025
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18 changes: 18 additions & 0 deletions galaxy-umsa.grid.cesnet.cz/ipapy2.yml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
tool_panel_section_label: ipapy2
tools:
- name: ipapy2_clustering
owner: recetox
- name: ipapy2_compute_all_adducts
owner: recetox
- name: ipapy2_compute_bio
owner: recetox
- name: ipapy2_gibbs_sampler_add
owner: recetox
- name: ipapy2_gibbs_sampler
owner: recetox
- name: ipapy2_map_isotope_patterns
owner: recetox
- name: ipapy2_ms1_annotation
owner: recetox
- name: ipapy2_ms2_annotation
owner: recetox
53 changes: 53 additions & 0 deletions galaxy-umsa.grid.cesnet.cz/ipapy2.yml.lock
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Original file line number Diff line number Diff line change
@@ -0,0 +1,53 @@
install_repository_dependencies: true
install_resolver_dependencies: false
install_tool_dependencies: false
tool_panel_section_label: ipapy2
tools:
- name: ipapy2_clustering
owner: recetox
revisions:
- cb18b8fcb441
tool_panel_section_id: ipapy2
tool_panel_section_label: ipapy2
- name: ipapy2_compute_all_adducts
owner: recetox
revisions:
- f85a6d4e44b0
tool_panel_section_id: ipapy2
tool_panel_section_label: ipapy2
- name: ipapy2_compute_bio
owner: recetox
revisions:
- ca72f5330bc9
tool_panel_section_id: ipapy2
tool_panel_section_label: ipapy2
- name: ipapy2_gibbs_sampler_add
owner: recetox
revisions:
- 428abc41a101
tool_panel_section_id: ipapy2
tool_panel_section_label: ipapy2
- name: ipapy2_gibbs_sampler
owner: recetox
revisions:
- b2253cf7db76
tool_panel_section_id: ipapy2
tool_panel_section_label: ipapy2
- name: ipapy2_map_isotope_patterns
owner: recetox
revisions:
- 774152f21f29
tool_panel_section_id: ipapy2
tool_panel_section_label: ipapy2
- name: ipapy2_ms1_annotation
owner: recetox
revisions:
- 7f84a8a5edde
tool_panel_section_id: ipapy2
tool_panel_section_label: ipapy2
- name: ipapy2_ms2_annotation
owner: recetox
revisions:
- 6a23970e8093
tool_panel_section_id: ipapy2
tool_panel_section_label: ipapy2
2 changes: 2 additions & 0 deletions galaxy-umsa.grid.cesnet.cz/pre_processing.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -6,3 +6,5 @@ tools:
owner: recetox
- name: bioconductor_msnbase_smooth_mz
owner: recetox
- name: bioconductor_mzr
owner: recetox
10 changes: 10 additions & 0 deletions galaxy-umsa.grid.cesnet.cz/recetox.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -46,3 +46,13 @@ tools:
owner: recetox
- name: isolib
owner: recetox
- name: wtv
owner: recetox
- name: mzspeclib_convert
owner: recetox
- name: mzspeclib_describe
owner: recetox
- name: mzspeclib_validate
owner: recetox
- name: mztabm_validate
owner: recetox