CausalTestingFramework/pyproject.toml at main · CITCOM-project/CausalTestingFramework · GitHub

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[build-system]
requires = [
"setuptools>=64",
"setuptools_scm[toml]>=6.2",
"wheel"
]
build-backend = "setuptools.build_meta"

[project]
name = "causal_testing_framework"
authors = [{ name = "The CITCOM team" }]
description = "A framework for causal testing using causal directed acyclic graphs."
readme = "README.md"
requires-python = ">=3.11,<3.15"
license = { text = "MIT" }
keywords = ["causal inference","verification"]
dependencies = [
"lifelines",
"networkx>=3.4,<3.7",
"numpy>=1.26.0,<=2.4.4",
"pandas>=2.1",
"scikit_learn~=1.4",
"scipy>=1.12.0,<=1.17.1",
"statsmodels~=0.14",
"tabulate~=0.9",
"pydot~=2.0",
"pygad~=3.3",
"deap~=1.4.1",
"sympy~=1.14.0",
"pyarrow>=19.0.1,<25",
"fastparquet>=2024.11.0",
"tqdm~=4.67.1"
]
dynamic = ["version"]

[project.optional-dependencies]
dev = [
"astroid==3.3.8",
"isort",
"pytest",
"pylint",
"black",
"autoapi",
"myst-parser",
"sphinx",
"sphinx-autoapi",
"sphinx_rtd_theme",
"nbsphinx",
"ipykernel",
"pandoc",
"pre-commit",
"tox",
]
test = [
"nbclient",
"nbformat",
"ipykernel",
]

[project.urls]
Homepage = "https://sites.google.com/sheffield.ac.uk/citcom/home"
Documentation = "https://causal-testing-framework.readthedocs.io/"
Repository = "https://github.com/CITCOM-project/CausalTestingFramework"
Issues = "https://github.com/CITCOM-project/CausalTestingFramework/issues"

[project.scripts]
causal-testing = "causal_testing.__main__:main"

[project.entry-points."estimators"]
LinearRegressionEstimator = "causal_testing.estimation.linear_regression_estimator:LinearRegressionEstimator"
LogisticRegressionEstimator = "causal_testing.estimation.logistic_regression_estimator:LogisticRegressionEstimator"
CubicSplineEstimator = "causal_testing.estimation.cubic_spline_estimator:CubicSplineEstimator"
InstrumentalVariableEstimator = "causal_testing.estimation.instrumental_variable_estimator:InstrumentalVariableEstimator"
IPCWEstimator = "causal_testing.estimation.ipcw_estimator:IPCWEstimator"

[project.entry-points."causal_effects"]
NoEffect = "causal_testing.testing.causal_effect:NoEffect"
SomeEffect = "causal_testing.testing.causal_effect:SomeEffect"
Positive = "causal_testing.testing.causal_effect:Positive"
Negative = "causal_testing.testing.causal_effect:Negative"
ExactValue = "causal_testing.testing.causal_effect:ExactValue"

[tool.setuptools.packages]
find = {}

[tool.setuptools_scm]
write_to = "causal_testing/_version.py"

[tool.black]
# https://github.com/psf/black
line-length = 120
target-version = ["py311"]

[tool.isort]
profile = "black"
line_length = 120

[tool.pytest.ini_options]
filterwarnings = [
"ignore:datetime.datetime.utcnow:DeprecationWarning:lifelines",
"ignore::DeprecationWarning:jupyter_client.*",
"ignore::RuntimeWarning:zmq.*",
]
minversion = "6.0"
python_files = [
"test_*.py",
"example_*.py"
]

[tool.tox]
requires = ["tox>=4.19"]
env_list = ["3.11","3.12","3.13","3.14"]
skip_missing_interpreters = false # fail if devs don’t have all required Python versions

# Base configuration for all test environments
[tool.tox.env_run_base]
description = "Run pytest under {base_python}"
extras = ["dev","test"]
deps = ["pytest"]
commands = [
  [
    "pytest",
    "{posargs:tests}",
  ],
]
# Automatically test for type-checking (TODO: enable type checking in env_list in the future)
[tool.tox.env.type]
description = "Run type checks with mypy on the codebase"
deps = [
"mypy==1.18.2",
"types-cachetools>=5.5.0.20240820",
"types-chardet>=5.0.4.6"
]
commands = [["mypy","causal_testing"],["mypy","tests"]]