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Always use a YAML parser to read YAML files #15

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@nrferguson

batch_file.yaml is often read by parsing a specific line. This means that, when a line is added or removed, every script that reads the file needs to be updated, too.

List of scripts that read batch_file.yaml this way:

Using a YAML parser will allow the file to be read without depending on line position. This may be a good reason to start to translating these batch scripts to Python.

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