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1 parent 3442698 commit 68a92daCopy full SHA for 68a92da
1 file changed
include/SASearcher.hpp
@@ -88,15 +88,15 @@ class SASearcher {
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if (ubIn - lbIn == 2) {
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lbIn += 1;
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auto i = startAt;
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- while (i < m and SA.at(lbIn) + i < n) {
+ while (i < m and SA[lbIn] + i < n) {
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char queryChar = ::toupper(*(qb + i));
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// If we're reverse complementing
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if (complementBases) {
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queryChar = rapmap::utils::my_mer::complement(queryChar);
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}
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- if ( queryChar < *(sb + SA.at(lbIn) + i) ) {
+ if ( queryChar < *(sb + SA[lbIn] + i) ) {
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break;
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- } else if ( queryChar > *(sb + SA.at(lbIn) + i)) {
+ } else if ( queryChar > *(sb + SA[lbIn] + i)) {
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++i;
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