SelectSim_py/CITATION.cff at main · CSOgroup/SelectSim_py · GitHub

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cff-version: 1.2.0
message: "If you use this software, please cite it using the metadata below, and cite the accompanying article as the primary reference (see 'preferred-citation')."
type: software
title: "SelectSim (Python)"
abstract: >-
  A Python implementation of the SelectSim methodology for inferring
  evolutionary dependencies -- co-mutations and mutual exclusivities --
  between functional alterations across cancer genomes. Estimates expected
  co-mutation frequencies from individual gene mutation rates and per-sample
  tumor mutation burden (TMB), then evaluates significance against a
  permutation-based null model.
version: 0.2.0
date-released: "2026-07-12"
license: MIT
repository-code: "https://github.com/CSOgroup/SelectSim_py"
url: "https://csogroup.github.io/SelectSim/"
authors:
  - given-names: Arvind
    family-names: Iyer
    email: ayalurarvind@gmail.com
    orcid: "https://orcid.org/0000-0002-8247-700X"
  - given-names: Marco
    family-names: Mina
    email: marco.mina.85@gmail.com
  - given-names: Miljan
    family-names: Petrovic
    email: miljanpet93@gmail.com
  - given-names: Giovanni
    family-names: Ciriello
    email: giovanni.ciriello@unil.ch
    orcid: "https://orcid.org/0000-0003-2021-8683"
preferred-citation:
  type: article
  title: "Evolving patterns of co-mutations from tumor initiation to metastatic progression"
  journal: "Nature Genetics"
  year: 2026
  doi: "10.1038/s41588-026-02661-4"
  url: "https://doi.org/10.1038/s41588-026-02661-4"
  authors:
    - given-names: Arvind
      family-names: Iyer
    - given-names: Miljan
      family-names: Petrovic
    - given-names: Debora
      family-names: Sesia
    - given-names: Luca
      family-names: Nanni
    - given-names: Marco
      family-names: Mina
    - given-names: Giovanni
      family-names: Ciriello