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@@ -193,16 +193,16 @@ Headline 3 — Looking at a different dataset (See fecal transplants above) will
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## Visuals that tell a story 📣 { #story-visuals .oasis-report-out-section .oasis-report-out-day3 }
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![Second visual](docs/assets/Train_vs_validation_loss_MS.png)
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![Second visual](assets/Train_vs_validation_loss_MS.png)
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*Visual 1: Model loss showing convergence*
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![Story visual](./docs/assets/validation_metrics_by_epoch.png)
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![Story visual](assets/validation_metrics_by_epoch.png)
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*Visual 2: The GNN performs poorly on community abundance data, but still performs slightly better than random chance on presence/absence.*
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![Story visual](docs/assets/GZ_validation_presence_average_precision.png)
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![Story visual](assets/GZ_validation_presence_average_precision.png)
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*Visual 3: PyTorch_Geometric model performed well on predicting final fungal community member presence*
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Here, we trained one graph per microcosm, where each taxon is a node with donor and resident abundance/presence features. A 2-layer GraphSAGE model learns taxon embeddings from these features and optional taxon-taxon association edges, then uses two output heads to predict each taxon’s final presence probability and final log-abundance.

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