clean API

Author: pcahan1

src/pySingleCellNet/__init__.py

@@ -1,19 +1,17 @@
-"""PySingleCellNet"""
-
-from .config import SCN_CATEGORY_COLOR_DICT 
+"""PySingleCellNet"""
+
+from .config import SCN_CATEGORY_COLOR_DICT 
 from .config import SCN_DIFFEXP_KEY
 from . import plotting as pl
 from . import utils as ut
 from . import tools as tl
-from . import string_io as st
-
-# Public API
+
+# Public API
 __all__ = [
     "__version__",
     "pl",
     "ut",
     "tl",
-    "st",
 ]    
-
-
+
+

src/pySingleCellNet/config.py

@@ -1,25 +1,17 @@
-from palettable.cartocolors.qualitative import Safe_6
-# from palettable.tableau import GreenOrange_6
-from palettable.tableau import GreenOrange_12
 from palettable.tableau import Tableau_20
 
 
 # Annotation constants
 
 # Colormaps
 
-# see https://jiffyclub.github.io/palettable/tableau/#greenorange_12
-tmp_color_list = GreenOrange_12.mpl_colors
+# Color list for SCN categories (using Tableau_20 palette)
 tmp_color_list = Tableau_20.mpl_colors
 
-# SCN_CATEGORY_NAMES = ["Rand", "None", "Singular", "Parent.Child", "Sibling", "Hybrid"]
-# SCN_CATEGORY_NAMES = ["Singular", "Intermediate", "Hybrid", "None", "Rand"]
-# indices = [0, 1, 3, 15, 14]
 SCN_CATEGORY_NAMES = ["Rand", "None", "Hybrid", "Intermediate", "Singular"]
 indices = [14, 15, 3, 1, 0]
 
 selected_colors = [tmp_color_list[i] for i in indices]
-### SCN_CATEGORY_COLOR_DICT = dict(zip(SCN_CATEGORY_NAMES, tmp_color_list))
 SCN_CATEGORY_COLOR_DICT = dict(zip(SCN_CATEGORY_NAMES, selected_colors))
 del(tmp_color_list)
 del(selected_colors)