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Brian Do
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Update README.md
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README.md

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@@ -23,7 +23,7 @@ The following README will focus mainly on `fasticlip`. The pdf in the repository
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Usage
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`fasticlip [-h] -i INPUT [INPUT ...] [--trimmed] [--hg19 | --mm9] -s STAR_INDEX -n NAME -o OUTPUT [-f N] [-a ADAPTER] [-tr REPEAT_THRESHOLD_RULE] [-tn NONREPEAT_THRESHOLD_RULE] [-m MAPQ] [-q Q] [-p P] [-l L]`
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`fasticlip [-h] -i INPUT [INPUT ...] [--trimmed] [--hg19 | --mm9] -s STAR_INDEX -n NAME -o OUTPUT [-f N] [-a ADAPTER] [-tr REPEAT_THRESHOLD_RULE] [-tn NONREPEAT_THRESHOLD_RULE] [-m MAPQ] [-q Q] [-p P] [-l L] [--verbose]`
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Example: `fasticlip -i rawdata/example_MMhur_R1.fastq rawdata/example_MMhur_R2.fastq --mm9 -s /seq/STAR/indexes/mm9 -n MMhur -o results`
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