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| 1 | +--- |
| 2 | +header-includes: |
| 3 | + - \hypersetup{colorlinks=true, |
| 4 | + urlcolor=blue, |
| 5 | + linkcolor=blue, |
| 6 | + filecolor=blue, |
| 7 | + citecolor=blue} |
| 8 | +--- |
| 9 | + |
1 | 10 | # Post-Course Resources |
2 | 11 |
|
| 12 | +## Python and Jupyter |
| 13 | + |
| 14 | +Comprehensive list of tutorials for learning Python: |
| 15 | + |
| 16 | +* <https://wiki.python.org/moin/BeginnersGuide/Programmers> |
| 17 | + |
| 18 | +Making interactive Jupyter Notebooks with sliders and buttons: hello |
| 19 | + |
| 20 | +* <https://blog.dominodatalab.com/interactive-dashboards-in-jupyter/> |
| 21 | +* Docs: <https://ipywidgets.readthedocs.io/en/stable/> |
| 22 | + |
| 23 | +Making online interactive scientific applications with Python: |
| 24 | + |
| 25 | +* <http://hplgit.github.io/web4sciapps/doc/pub/> |
| 26 | + |
| 27 | +Using Jupyter Notebooks as slides: |
| 28 | + |
| 29 | +* <https://github.com/damianavila/RISE> |
| 30 | + |
| 31 | +Python tools for computational molecular biology: |
| 32 | + |
| 33 | +* <https://biopython.org/> |
| 34 | + |
| 35 | +An example of calling ImageJ functionality within a Jupyter Notebook: |
| 36 | + |
| 37 | +* <https://nbviewer.jupyter.org/github/imagej/tutorials/blob/master/notebooks/1-Using-ImageJ/6-ImageJ-with-Python-Kernel.ipynb> |
| 38 | + |
| 39 | +### Machine learning with Python |
| 40 | + |
| 41 | +PCA clustering of Iris dataset using scikit: |
| 42 | + |
| 43 | +* <https://towardsdatascience.com/pca-using-python-scikit-learn-e653f8989e60> |
| 44 | + |
| 45 | +PCA clustering of Iris dataset using plotly: |
| 46 | + |
| 47 | +* <https://plot.ly/ipython-notebooks/principal-component-analysis/> |
| 48 | + |
| 49 | +k-means clustering with display on 3D plots using scikit: |
| 50 | + |
| 51 | +* <https://scikit-learn.org/stable/auto_examples/cluster/plot_cluster_iris.html> |
| 52 | + |
3 | 53 | ## Unix |
4 | 54 |
|
5 | 55 | Comprehensive tutorial of linux/MacOS command line interface: |
6 | | -* http://www.ee.surrey.ac.uk/Teaching/Unix/index.html |
7 | 56 |
|
8 | | -## Programming |
| 57 | +* <http://www.ee.surrey.ac.uk/Teaching/Unix/index.html> |
| 58 | + |
| 59 | +## Programming |
9 | 60 |
|
10 | 61 | A vast repository of programming exercises with solutions and active discussion on each exercise: |
11 | | -* https://www.hackerrank.com/domains/python |
| 62 | + |
| 63 | +* <https://www.hackerrank.com/domains/python> |
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