@@ -22,12 +22,17 @@ echo 'Running queries in 10 directories.'
2222echo ' Directory 1: demographics'
2323bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .heightweight" < " demographics/heightweight.sql"
2424bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .icustay_detail" < " demographics/icustay_detail.sql"
25+ # icustay_hours (and pivoted_oasis) need icustay_times first
26+ bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .icustay_times" < " demographics/icustay_times.sql"
27+ bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .icustay_hours" < " demographics/icustay_hours.sql"
2528
2629# Durations (usually of treatments)
2730echo ' Directory 2: durations'
2831bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .ventilation_classification" < " durations/ventilation_classification.sql"
2932bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .ventilation_durations" < " durations/ventilation_durations.sql"
3033bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .crrt_durations" < " durations/crrt_durations.sql"
34+ bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .arterial_line_durations" < " durations/arterial_line_durations.sql"
35+ bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .central_line_durations" < " durations/central_line_durations.sql"
3136bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .adenosine_durations" < " durations/adenosine_durations.sql"
3237bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .dobutamine_durations" < " durations/dobutamine_durations.sql"
3338bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .dopamine_durations" < " durations/dopamine_durations.sql"
@@ -46,6 +51,7 @@ bq query ${BQ_FLAGS} --destination_table="${TARGET_DATASET}.epinephrine_dose" <
4651bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .norepinephrine_dose" < " durations/norepinephrine_dose.sql"
4752bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .phenylephrine_dose" < " durations/phenylephrine_dose.sql"
4853bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .vasopressin_dose" < " durations/vasopressin_dose.sql"
54+ bq query ${BQ_FLAGS} --destination_table=" ${TARGET_DATASET} .neuroblock_dose" < " durations/neuroblock_dose.sql"
4955
5056# "pivoted" tables which have icustay_id / timestamp as the primary key
5157echo ' Directory 3: pivoted tables'
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