pubmed: handle cases with missing pubmedid

Gerit Wagner · Gerit Wagner · commit 2dd0f47680fd · 2025-12-12T12:15:16.000+01:00
diff --git a/colrev/packages/pubmed/src/pubmed.py b/colrev/packages/pubmed/src/pubmed.py
@@ -260,6 +260,9 @@ def _get_masterdata_record(
                 logger=self.logger,
             )
 
+            if "pubmedid" not in record.data:
+                return record
+
             retrieved_record = api.query_id(pubmed_id=record.data["pubmedid"])
 
             if not retrieved_record:

Original file line number	Diff line number	Diff line change
`@@ -260,6 +260,9 @@ def _get_masterdata_record(`
`260`	`260`	`logger=self.logger,`
`261`	`261`	`)`
`262`	`262`
	`263`	`+ if "pubmedid" not in record.data:`
	`264`	`+ return record`
	`265`	`+`
`263`	`266`	`retrieved_record = api.query_id(pubmed_id=record.data["pubmedid"])`
`264`	`267`
`265`	`268`	`if not retrieved_record:`