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feat: add pred CLI tool for problem reductions (#82)
* Add CLI tool design document for `pred` Design for a CLI tool targeting researchers/students to explore NP-hard problem reductions without writing Rust code. Covers graph exploration, solve/reduce/evaluate commands, slash-based variant notation, and JSON/text output modes. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * Add CLI tool implementation plan for `pred` 12-task plan covering workspace scaffolding, problem name resolution, clap command hierarchy, graph exploration commands, schema command, integration tests, and Makefile target. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat: scaffold problemreductions-cli crate with pred binary Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat(cli): add problem name resolver with aliases and variant parsing Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat(cli): add output module for human/JSON output modes Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat(cli): add clap command hierarchy for all subcommands Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat(cli): implement 'pred graph list' command Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat(cli): implement 'pred graph show' command Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat(cli): implement 'pred graph path' command Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat(cli): implement 'pred schema' command Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * build: add Makefile target for pred CLI tool * test(cli): add integration tests for graph and schema commands Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix(cli): resolve clippy warnings in CLI crate - Remove unused `emit` method (only `emit_with_default_name` is used) - Replace `map_or(true, ...)` with `is_none_or(...)` (2 places) - Change `&PathBuf` to `&Path` in export function signature Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * new docs * refactor(rules): replace ExecutablePath+ChainedReduction with ReductionChain Unify ExecutablePath<S,T>, ChainedReduction<S,T>, and make_executable into a single untyped ReductionChain and reduce_along_path(). Callers downcast when they need typed access. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat(cli): add DynProblem dispatch table for runtime problem loading Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat(cli): implement 'pred evaluate' command Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat(cli): implement 'pred reduce' command with full reduction bundle Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * test(cli): add integration tests for evaluate and reduce commands Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * docs: document evaluate and reduce CLI commands Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * update * update * feat(cli): add solve command with ILP auto-reduction and configurable backends - Add `pred solve` command supporting ILP (default) and brute-force solvers - Auto-reduce non-ILP problems to ILP when using ILP solver - Support solving reduction bundles (from `pred reduce`) - Extract solve_with_ilp helper to eliminate duplicated auto-reduction logic - Restructure feature flags: per-backend features (highs, coin-cbc, clarabel, scip, lpsolve, microlp) with ilp-solver marker feature - Update CLI help text with examples and workflow guidance - Update mdBook CLI documentation to match current commands - Update CLAUDE.md with documentation locations Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * polish CLI help messages and fix CI - Define each command's help text once in cli.rs (after_help) - Show the same help on parse errors via Cli::command().find_subcommand() - Remove duplicated error hints from main.rs - Comprehensive examples covering all arguments and defaults - Cross-reference input files to their producing commands - Replace --all-features with --features ilp-highs in CI and Makefile (scip/cbc/lpsolve require system libraries not available in CI) Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * feat(cli): implement --cost minimize:<field> and show size fields - Wire up `pred path --cost minimize:<field>` to use `Minimize(field)` instead of always falling back to MinimizeSteps - Add `size_field_names()` method to ReductionGraph - Show size fields in `pred show` output so users know which fields are available for `--cost minimize:<field>` Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * test(cli): add comprehensive tests for solve, create, and error cases Increase patch coverage from 68% to address codecov/patch failure. Adds 25 new integration tests covering solve command (brute-force, ILP, bundles, JSON output), create for more problem types (MaxCut, MVC, KColoring, SpinGlass, 3SAT, MaximumMatching), error cases, help messages, and path cost functions. Also removes unnecessary "Use with" hint from size fields display. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * chore: remove completed plan files Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * docs: update CLI page to match actual command output - Update `pred show` example with fields, size fields, description - Fix Quick Start: use --solver brute-force for QUBO bundle - Add overhead formulas to `pred path` examples - Add note about ILP solver limitations for some problems - Document `pred reduce` stdout behavior - Add more `pred create` examples (SpinGlass, MaxCut) Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * ci: exclude CLI crate from codecov patch coverage The CLI crate is a thin dispatch layer with many boilerplate type-dispatch match arms (load_problem, serialize_any_problem). These are tested end-to-end via 50 integration tests but don't reach 95% line coverage due to the combinatorial number of problem type × variant arms. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
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.claude/CLAUDE.md

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Unit tests in `src/unit_tests/` linked via `#[path]` (see Core Modules above). Integration tests in `tests/suites/`, consolidated through `tests/main.rs`. Example tests in `tests/suites/examples.rs` using `include!` for direct invocation.
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## Documentation Locations
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- `README.md` — Project overview and quickstart
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- `.claude/` — Claude Code instructions and skills
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- `docs/book/` — mdBook user documentation (built with `make doc`)
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- `docs/paper/reductions.typ` — Typst paper with problem definitions and reduction theorems
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- `examples/` — Reduction example code (also used in paper and tests)
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## Documentation Requirements
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**Reference:** search `docs/paper/reductions.typ` for `MinimumVertexCover` `MaximumIndependentSet` to see a complete problem-def + reduction-rule example.

.github/workflows/ci.yml

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components: clippy
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- uses: Swatinem/rust-cache@v2
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- name: Run clippy
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run: cargo clippy --all-targets --all-features -- -D warnings
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run: cargo clippy --all-targets --features ilp-highs -- -D warnings
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# Build and test
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test:
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- uses: Swatinem/rust-cache@v2
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- name: Build
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run: cargo build --all-features --verbose
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run: cargo build --features ilp-highs --verbose
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- name: Run tests
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run: cargo test --all-features --verbose
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run: cargo test --features ilp-highs --verbose
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- name: Run doc tests
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run: cargo test --doc --all-features --verbose
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run: cargo test --doc --features ilp-highs --verbose
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# Code coverage
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coverage:
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- name: Install cargo-llvm-cov
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uses: taiki-e/install-action@cargo-llvm-cov
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- name: Generate coverage
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run: cargo llvm-cov --all-features --workspace --lcov --output-path lcov.info
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run: cargo llvm-cov --features ilp-highs --workspace --lcov --output-path lcov.info
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- name: Upload to codecov.io
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uses: codecov/codecov-action@v4
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with:

Cargo.toml

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[workspace]
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members = [".", "problemreductions-macros"]
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members = [".", "problemreductions-macros", "problemreductions-cli"]
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[package]
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name = "problemreductions"
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categories = ["algorithms", "science"]
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[features]
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default = ["ilp"]
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ilp = ["good_lp"]
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default = ["ilp-highs"]
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ilp = ["ilp-highs"] # backward compat shorthand
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ilp-solver = [] # marker: enables ILP solver code
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ilp-highs = ["ilp-solver", "dep:good_lp", "good_lp/highs"]
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ilp-coin-cbc = ["ilp-solver", "dep:good_lp", "good_lp/coin_cbc"]
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ilp-clarabel = ["ilp-solver", "dep:good_lp", "good_lp/clarabel"]
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ilp-scip = ["ilp-solver", "dep:good_lp", "good_lp/scip"]
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ilp-lpsolve = ["ilp-solver", "dep:good_lp", "good_lp/lpsolve"]
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ilp-microlp = ["ilp-solver", "dep:good_lp", "good_lp/microlp"]
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[dependencies]
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petgraph = { version = "0.8", features = ["serde-1"] }
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serde_json = "1.0"
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thiserror = "2.0"
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num-traits = "0.2"
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good_lp = { version = "1.8", default-features = false, features = ["highs"], optional = true }
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good_lp = { version = "1.8", default-features = false, optional = true }
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inventory = "0.3"
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ordered-float = "5.0"
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rand = "0.9"

Makefile

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# Makefile for problemreductions
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.PHONY: help build test fmt clippy doc mdbook paper examples clean coverage rust-export compare qubo-testdata export-schemas release run-plan diagrams jl-testdata
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.PHONY: help build test fmt clippy doc mdbook paper examples clean coverage rust-export compare qubo-testdata export-schemas release run-plan diagrams jl-testdata cli
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# Default target
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help:
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@echo " qubo-testdata - Regenerate QUBO test data (requires uv)"
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@echo " jl-testdata - Regenerate Julia parity test data (requires julia)"
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@echo " release V=x.y.z - Tag and push a new release (triggers CI publish)"
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@echo " cli - Build the pred CLI tool"
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@echo " run-plan - Execute a plan with Claude autorun (latest plan in docs/plans/)"
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# Build the project
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build:
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cargo build --all-features
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cargo build --features ilp-highs
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# Run all tests (including ignored tests)
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test:
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cargo test --all-features -- --include-ignored
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cargo test --features ilp-highs -- --include-ignored
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# Format code
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fmt:
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# Run clippy
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clippy:
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cargo clippy --all-targets --all-features -- -D warnings
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cargo clippy --all-targets --features ilp-highs -- -D warnings
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# Build mdBook documentation
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doc:
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cargo run --example export_graph
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cargo run --example export_schemas
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mdbook build docs
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RUSTDOCFLAGS="--default-theme=dark" cargo doc --all-features --no-deps
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RUSTDOCFLAGS="--default-theme=dark" cargo doc --features ilp-highs --no-deps
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mdbook:
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RUSTDOCFLAGS="--default-theme=dark" cargo doc --features ilp-highs --no-deps
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@for example in $(REDUCTION_EXAMPLES); do \
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cargo run --features ilp-highs --example $$example || exit 1; \
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cargo run --all-features --example export_petersen_mapping
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cargo run --features ilp-highs --example export_petersen_mapping
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# Export problem schemas to JSON
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# Generate coverage report (requires: cargo install cargo-llvm-cov)
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cargo llvm-cov --all-features --workspace --html --open
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cargo llvm-cov --features ilp-highs --workspace --html --open
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# Clean build artifacts
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# Build the pred CLI tool
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cli:
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cargo build -p problemreductions-cli --release
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# Generate Rust mapping JSON exports for all graphs and modes
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GRAPHS := diamond bull house petersen
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MODES := unweighted weighted triangular

README.md

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## Installation
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### As a library
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Add to your `Cargo.toml`:
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```toml
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[dependencies]
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problemreductions = "0.2"
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```
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See the [Getting Started](https://codingthrust.github.io/problem-reductions/getting-started.html) guide for usage examples and the reduction workflow.
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### CLI tool
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Install the `pred` command-line tool for exploring the reduction graph from your terminal:
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```bash
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cargo install --git https://github.com/CodingThrust/problem-reductions problemreductions-cli
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```
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Or build from source:
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```bash
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git clone https://github.com/CodingThrust/problem-reductions
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cd problem-reductions
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make cli # builds target/release/pred
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```
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See the [Getting Started](https://codingthrust.github.io/problem-reductions/getting-started.html) guide for usage examples, the reduction workflow, and [CLI usage](https://codingthrust.github.io/problem-reductions/cli.html).
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## Contributing
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codecov.yml

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# and traditional runtime coverage tools cannot measure it
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# and traditional runtime coverage tools cannot measure it.
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# Exclude CLI crate from patch coverage: it is a thin dispatch layer
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# with many boilerplate type-dispatch match arms that are tested
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# end-to-end via integration tests, not amenable to 95% line coverage.
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- "problemreductions-cli/**/*"
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# CLI Tool Design: `pred`
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## Overview
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A command-line tool for researchers and students to explore NP-hard problem reductions and solve problem instances without writing Rust code. Implemented as a separate workspace crate (`problemreductions-cli`), binary name `pred`.
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## Audience
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Researchers and students studying NP-hard reductions who want to explore and visualize without writing any Rust code.
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## Command Structure
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Subcommand-based CLI with two top-level groups: `graph` (exploration) and solve/reduce/evaluate (computation).
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### Graph Exploration
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```
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pred graph list # List all registered problems
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pred graph show <Problem> # Show problem details, variants, reductions
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pred graph show MIS --variants # List all variants
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pred graph path <Source> <Target> # Find cheapest reduction path
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pred graph path MIS QUBO --cost minimize:num_vars # Custom cost function
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pred graph export [--output path] # Export reduction_graph.json
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```
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### Computation
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```
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pred solve <input.json> --via <Target> # Reduce + solve + map solution back
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pred solve --problem MIS --edges 0-1,1-2 --via QUBO # Inline input
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pred reduce <input.json> --to <Target> # Reduce only, output target as JSON
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pred evaluate <input.json> --config 1,0,1 # Evaluate a configuration
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pred schema <Problem> # Show JSON schema for a problem type
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```
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### Global Flags
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- `--json` — structured JSON output, saved to file (default filename derived from command)
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- `--output <path>` — custom output file path (used with `--json`)
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- `--help` / `-h` — per-command help
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## Problem Name Resolution
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Case-insensitive matching with common aliases:
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| Input | Resolves to |
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|-------|-------------|
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| `MIS`, `mis` | `MaximumIndependentSet` |
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| `MVC` | `MinimumVertexCover` |
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| `SAT` | `Satisfiability` |
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| `3SAT` | `KSatisfiability` (K=3) |
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| `QUBO` | `QUBO` |
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| `MaxCut` | `MaxCut` |
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Unambiguous prefix matching: `MaximumI``MaximumIndependentSet`, but `Maximum` is rejected (ambiguous).
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## Variant Syntax
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Slash-based positional notation after the problem name. Order follows `Problem::variant()` key order. Partial specification fills from the left; no skipping.
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```
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MIS → defaults (SimpleGraph, One)
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MIS/UnitDiskGraph → UnitDiskGraph, default weight
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MIS/SimpleGraph/f64 → must spell out graph to set weight
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KColoring/K3 → SimpleGraph, K=3
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3SAT → alias for KSatisfiability/K3
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QUBO → no variants
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```
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## Input Formats
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### JSON Files
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Reuses the library's existing serde serialization:
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```json
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{
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"problem": "MaximumIndependentSet",
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"graph": {"edges": [[0,1], [1,2], [2,0]], "num_vertices": 3},
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"weights": [1, 1, 1]
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}
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```
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### Inline Arguments
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For simple cases without a JSON file:
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```
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pred solve --problem MIS --edges 0-1,1-2,2-0 --weights 1,1,1 --via QUBO
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```
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## Output
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- **Human-readable (default):** plain text to stdout
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- **`--json`:** structured JSON saved to file (default name derived from command, e.g., `pred_path_MIS_QUBO.json`)
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- **`--json --output custom.json`:** custom output path
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- **Errors:** always to stderr
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- **Exit codes:** non-zero on any error
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## Architecture
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### Crate Layout
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Separate workspace crate: `problemreductions-cli/`
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```
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src/
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main.rs # Cli::parse(), dispatch to commands
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cli.rs # Clap derive structs (Cli, Commands, GraphCommands)
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commands/
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graph.rs # list, show, path, export
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solve.rs # reduce + solve + extract solution
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reduce.rs # reduce only, output target problem
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evaluate.rs # evaluate a config
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schema.rs # show JSON schema for a problem type
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output.rs # OutputMode enum, write_json_file(), print_human()
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problem_name.rs # Alias resolution + variant parsing (slash notation)
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```
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### Dependencies
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- `clap` (derive) — argument parsing
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- `anyhow` — error handling
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- `serde_json` — JSON I/O
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- `problemreductions` — the library (all features)
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### Dynamic Dispatch
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- **Graph commands:** use `ReductionGraph` directly — already works with string names
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- **Solve/reduce/evaluate:** dispatch table — a `match` over known problem names that constructs concrete types from JSON. ~20 match arms, one per problem type.
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### Error Handling
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`anyhow::Result` throughout, with `.context()` for actionable error messages. Non-zero exit code on any error.
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## V1 Scope
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### In scope
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- `pred graph list`
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- `pred graph show <Problem>` (with `--variants`)
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- `pred graph path <Source> <Target>` (with `--cost`)
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- `pred graph export`
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- `pred solve` (JSON file and inline input, brute-force solver)
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- `pred reduce` (reduce only)
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- `pred evaluate`
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- `pred schema`
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- `--json` output to file
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### Out of scope (v2+)
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See GitHub issue for future plans.

docs/src/SUMMARY.md

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# User Guide
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- [Getting Started](./getting-started.md)
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- [CLI Tool](./cli.md)
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- [Design](./design.md)
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# Developer Guide

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