added additional dev dependencies

Author: rela-v

Dockerfile

@@ -1,13 +1,14 @@
 # 1. Use R 4.5.1
 FROM rocker/r-ver:4.5.1
 
-# 2. Install system dependencies (including cmake, nlopt, curl, and certificates)
+# 2. Install system dependencies (including cmake, nlopt, curl, certificates, and graphics libs)
 RUN apt-get update && apt-get install -y --no-install-recommends \
     libxml2-dev libssl-dev libcurl4-openssl-dev libpng-dev \
     libjpeg-dev libtiff-dev libfreetype6-dev libharfbuzz-dev \
     libfribidi-dev libicu-dev libglpk-dev zlib1g-dev \
     gfortran pandoc pkg-config \
     cmake libnlopt-dev curl ca-certificates \
+    libx11-dev libxt-dev libxrender1 libxext6 libfontconfig1-dev libcairo2-dev \
     && rm -rf /var/lib/apt/lists/*
 
 # 3. Setup Environment
@@ -16,7 +17,6 @@ ENV RENV_PATHS_LIBRARY=/opt/renv/library
 ENV R_PROFILE_USER=/dev/null
 # Force renv to use Linux binaries for speed
 ENV RENV_CONFIG_REPOS_OVERRIDE="https://packagemanager.posit.co/cran/__linux__/noble/latest"
-# Force renv to install binaries where available
 ENV RENV_CONFIG_INSTALL_TYPE=binary
 
 WORKDIR /project
@@ -26,12 +26,16 @@ COPY renv.lock .Rprofile ./
 COPY renv/activate.R renv/activate.R
 
 # Bootstrap: Install renv from CRAN binaries
-RUN R -e "options(repos = c(CRAN = 'https://packagemanager.posit.co/cran/__linux__/noble/latest')); install.packages('renv')"
+RUN R -e "options(repos = c(CRAN='https://packagemanager.posit.co/cran/__linux__/noble/latest')); install.packages('renv')"
 
 RUN mkdir -p /opt/renv/library
 
-# Restore packages to /opt/renv/library (binaries used via env variable)
-RUN R -e "renv::restore(library='/opt/renv/library')"
+# 4a. Pre-install stubborn packages to prevent restore failures
+RUN R -e "install.packages(c('ggrepel','patchwork','FactoMineR','ggpubr','factoextra','aplot','ggVennDiagram','PAVER'), \
+          repos='https://packagemanager.posit.co/cran/__linux__/noble/latest')"
+
+# 4b. Restore remaining packages (non-interactive)
+RUN R -e "renv::restore(library='/opt/renv/library', prompt=FALSE, clean=FALSE)"
 
 # 5. Copy all application files
 COPY . .