aligned dockerfile with mac version

Author: rela-v

Dockerfile

@@ -1,30 +1,24 @@
-# 1. Use R 4.4.2 (Ubuntu 22.04 Jammy)
-FROM rocker/r-ver:4.4.2
+# 1. Use R 4.5.1 to match your Mac
+FROM rocker/r-ver:4.5.1
 
 # 2. Install system dependencies
+# Note: Ubuntu 24.04 (Noble) uses libicu74, matching R 4.5 binaries
 RUN apt-get update && apt-get install -y --no-install-recommends \
     libxml2-dev libssl-dev libcurl4-openssl-dev \
     libpng-dev libjpeg-dev zlib1g-dev libicu-dev \
-    glpk-utils libglpk-dev \ 
-    pandoc \
+    libglpk-dev gfortran pandoc \
     && rm -rf /var/lib/apt/lists/*
 
 WORKDIR /project
 
-# 3. FORCE STABLE REPOS
-# We add the Bioconductor repo override here to fix the 'fgsea' 3.21 error
-ENV RENV_CONFIG_REPOS_OVERRIDE="https://packagemanager.posit.co/cran/__linux__/jammy/latest"
-ENV RENV_BIOCONDUCTOR_VERSION="3.20"
+# 3. Use NOBLE (Ubuntu 24.04) binaries for R 4.5
+ENV RENV_CONFIG_REPOS_OVERRIDE="https://packagemanager.posit.co/cran/__linux__/noble/latest"
 ENV RENV_DOWNLOAD_METHOD="libcurl"
-ENV RENV_PATHS_LIBRARY="renv/library"
 
-# 4. Setup renv
+# 4. Setup and Restore
 COPY renv.lock .Rprofile ./
 COPY renv/activate.R renv/activate.R
 RUN mkdir -p renv/library data
-
-# 5. Restore
-# We detect cores to speed up the compilation of Bioc packages
 RUN R -e "options(Ncpus = parallel::detectCores()); renv::restore()"
 
 COPY *.Rmd ./