removed project specific configuration

Author: rela-v

configuration.yml

@@ -2,18 +2,14 @@
 species: human # [human, rat, mouse]
 gmt: Human_GOALL_with_GO_iea_March_01_2025_symbol.gmt # [Human, Rat, Mouse]
 data:
-  - group1: SUD
-    group2: CTL
-    file: '3Pod_extdata/MDDSUD_project/sud_toptable.csv'
-  - group1: MDD-SUD
-    group2: CTL
-    file: '3Pod_extdata/MDDSUD_project/mddsud_toptable.csv'
-  - group1: MDD
-    group2: CTL
-    file: '3Pod_extdata/MDDSUD_project/mdd_toptable.csv'
-
-# design: design.csv
-# counts: counts.csv
+  - group1: Disease A
+    group2: Control A
+    file: DAvsCA.csv
+  - group1: Disease B
+    group2: Control B
+    file: DBvsCB.csv
+design: design.csv
+counts: counts.csv
 
 # Debugging
 save_environment: false # Save whole environment or just global state?
@@ -26,3 +22,4 @@ mgi: MRK_List2_2025-03-01.csv
 lincs_fda: LINCS_FDA_Phases_2023-05-05.csv
 embeddings: anc2vec_02_06_25_embeddings.rds
 term2name: anc2vec_02_06_25_term2name.rds
+