configuration.yml

# For instructions on configuring the report see the README
species: human # [human, rat, mouse]
gmt: Human_GOALL_with_GO_iea_March_01_2025_symbol.gmt # [Human, Rat, Mouse]

# Statistical Options
use_fdr: true # [true, false] Set to true to show FDR line, false for raw p-value

data:
  - group1: DA
    group2: CA
    file: DAvsCA.csv
  - group1: DB
    group2: CB
    file: DBvsCB.csv

# design: design.csv
# counts: counts.csv

# Debugging
save_environment: false # Save whole environment or just global state?

# External assets - don't touch
humanmap: HGNChelper_currentHumanMap_2025-03-01.csv
hgnc: hgnc_complete_set_2025-03-01.csv
rgd: GENES_RAT_2025-03-01.csv
mgi: MRK_List2_2025-03-01.csv
lincs_fda: LINCS_FDA_Phases_2023-05-05.csv
embeddings: anc2vec_02_06_25_embeddings.rds
term2name: anc2vec_02_06_25_term2name.rds