index.qmd

---
title: "MultiomicMenu Report"
subtitle: "`r params$subtitle`"
author: "Cognitive Disorders Reserach Laboratory (CDRL)"
date: last-modified
date-format: "[Last Updated on] MMMM DD, YYYY"
params:
  subtitle: "For Dr. XYZ"
  species: human # one of: [human, mouse, rat]
  gmt: "https://download.baderlab.org/EM_Genesets/current_release/Human/symbol/Human_GO_AllPathways_noPFOCR_with_GO_iea_February_03_2026_symbol.gmt"
  data:
    value:
      rna: "data/ttable_24v0.csv"
    #  protein: "data/protein.csv"
      kinase_stk: "data/kinome_24_0_STK_creedenzymatic.csv"
      kinase_ptk: "data/kinome_24_0_PTK_creedenzymatic.csv"
    #  peptide: "data/peptides.csv"
---

This is a MultomicMenu report.

```{r}
#| label: "index_common"
#| include: FALSE
if(file.exists(here::here("data/env.RData"))) file.remove(here::here("data/env.RData")) # Delete old environment on run
source("_common.R")
```