MAINT: update some build steps (#27)

* MAINT: update some build steps

* dummy commit for CI

* Bump versions for CI

* Another attempt to fix the CI

* Add gsl to test environment

* Remove old python

* Add pandoc to pages job

Author: ColmTalbot

.devcontainer/devcontainer.json

@@ -0,0 +1,24 @@
+{
+  "name": "gwmemory 3.14",
+  "image": "mcr.microsoft.com/devcontainers/python:3.14-trixie",
+  "features": {
+    "ghcr.io/devcontainers/features/node:1": {
+      "version": "latest"
+    }
+  },
+  "customizations": {
+    "vscode": {
+      "settings": {
+        "python.defaultInterpreterPath": "/usr/local/bin/python",
+        "python.linting.enabled": true
+      },
+      "extensions": [
+        "ms-python.python",
+        "ms-python.vscode-pylance",
+        "ms-python.vscode-python-envs",
+        "GitHub.copilot"
+      ]
+    }
+  },
+  "postCreateCommand": "sudo apt-get update && sudo apt-get install -y libgsl-dev && pip install uv"
+}

.github/workflows/pages.yml

@@ -18,31 +18,25 @@ jobs:
     concurrency:
       group: ${{ github.workflow }}-${{ github.ref }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v6
       - name: Fetch all history for all tags and branches
         run: git fetch --prune --unshallow
-      - uses: s-weigand/setup-conda@v1
+      - uses: astral-sh/setup-uv@v8.1.0
+      - name: Setup Python
+        uses: actions/setup-python@v6
         with:
-          python-version: 3.11
+          python-version: 3.13
 
       - name: Install dependencies
         run: |
           sudo apt-get update
-          sudo apt-get install texlive-latex-extra texlive-fonts-recommended dvipng cm-super
-          conda install pip setuptools
-          conda install -c conda-forge --file requirements.txt --file optional_requirements.txt --file pages_requirements.txt
-          python -m pip install nrsur7dq2
-      - name: Install gwmemory
-        run: |
-          pip install .
-      - name: List installed
-        run: |
-          conda list
+          sudo apt-get install texlive-latex-extra texlive-fonts-recommended dvipng cm-super pandoc libgsl-dev
+          uv sync --extra full --extra docs
         
       - name: Run notebook
         run: |
           cd examples
-          jupyter nbconvert --to html --execute *.ipynb
+          uv run jupyter nbconvert --to html --execute *.ipynb
           cd ..
 
       - name: Build documentation
@@ -51,15 +45,15 @@ jobs:
           mv Makefile.gh_pages Makefile
           cp ../examples/GWMemory.ipynb ./example.ipynb
           cp ../examples/Comparison.ipynb ./comparison.ipynb
-          make clean
-          make html
+          uv run make clean
+          uv run make html
           cd ../
           touch _gh-pages/latest/html/.nojekyll
           rm -r docs
           mv _gh-pages/latest/html docs
 
       - name: Deploy
-        uses: peaceiris/actions-gh-pages@v3
+        uses: peaceiris/actions-gh-pages@v4
         if: ${{ github.ref == 'refs/heads/master' }}
         with:
           github_token: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/pypi.yml

@@ -14,26 +14,26 @@ jobs:
     name: Build and publish Python 🐍 distributions 📦 to PyPI and TestPyPI
     runs-on: ubuntu-20.04
     steps:
-    - uses: actions/checkout@master
+    - uses: actions/checkout@v6
     - name: Fetch all history for all tags and branches
       run: git fetch --prune --unshallow
-    - name: Set up Python 3.9
-      uses: actions/setup-python@v2
+    - name: Set up Python 3.13
+      uses: actions/setup-python@v6
       with:
-        python-version: 3.9
+        python-version: 3.13
     - name: Install pypa/build
       run: >-
         python -m pip install build setuptools_scm --user
     - name: Build a binary wheel and a source tarball
       run: >-
         python -m build --sdist --wheel --outdir dist/ .
 #     - name: Publish distribution 📦 to Test PyPI
-#       uses: pypa/gh-action-pypi-publish@master
+#       uses: pypa/gh-action-pypi-publish@v1
 #       with:
 #         password: ${{ secrets.TEST_PYPI_API_TOKEN }}
 #         repository_url: https://test.pypi.org/legacy/
     - name: Publish distribution 📦 to PyPI
       if: startsWith(github.ref, 'refs/tags')
-      uses: pypa/gh-action-pypi-publish@master
+      uses: pypa/gh-action-pypi-publish@v1
       with:
         password: ${{ secrets.PYPI_API_TOKEN }}

.github/workflows/unit_test.yml

@@ -24,41 +24,32 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.8", "3.9", "3.10"]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
 
     steps:
-    - uses: actions/checkout@v2
-    - name: Setup conda
-      uses: s-weigand/setup-conda@v1
+    - uses: actions/checkout@v6
+    - uses: astral-sh/setup-uv@v8.1.0
+    - name: Setup Python
+      uses: actions/setup-python@v6
       with:
-        update-conda: true
         python-version: ${{ matrix.python-version }}
-        conda-channels: anaconda, conda-forge
     - name: Install dependencies
       run: |
-        conda install pip setuptools
-        conda install flake8 pytest-cov
-        conda install -c conda-forge --file requirements.txt --file optional_requirements.txt
-        python -m pip install nrsur7dq2
-    - name: Install gwmemory
-      run: |
-        pip install .
-    - name: List installed
-      run: |
-        conda list
+        sudo apt-get install libgsl-dev
+        uv sync --extra full
     - name: Test with pytest
       run: |
-        pytest --cov gwmemory -ra --color yes --cov-report=xml --junitxml=pytest.xml
+        uv run pytest --cov gwmemory -ra --color yes --cov-report=xml --junitxml=pytest.xml
     - name: Publish coverage to Codecov
-      uses: codecov/codecov-action@v1.2.1
+      uses: codecov/codecov-action@v6
       with:
         files: coverage.xml
         flags: python${{ matrix.python-version }}
     - name: Coverage report
-      run: python -m coverage report --show-missing
+      run: uv run python -m coverage report --show-missing
     - name: Upload test results
       if: always()
-      uses: actions/upload-artifact@v2
+      uses: actions/upload-artifact@v7
       with:
         name: pytest-${{ matrix.python-version }}
         path: pytest.xml

.gitignore

@@ -24,6 +24,7 @@ wheels/
 .installed.cfg
 *.egg
 MANIFEST
+uv.lock
 
 # PyInstaller
 #  Usually these files are written by a python script from a template

README.md

@@ -11,6 +11,7 @@
 `GWMemory` is available via `conda-forge` and `pypi`
 
 ```console
+$ uv pip install gwmemory
 $ conda install -c conda-forge gwmemory
 $ python -m pip install gwmemory
 ```
@@ -20,9 +21,11 @@ You can also install from this repository in the usual way:
 ```console
 $ git clone https://github.com/ColmTalbot/gwmemory.git
 $ cd gwmemory
-$ python -m pip install .
+$ uv sync
 ```
 
+Use `uv sync --extra full` for the optional runtime and test dependencies, and `uv sync --extra full --extra docs` when building the documentation stack.
+
 ## Examples
 
 Demonstrations of how to calculate memory waveforms can be found in the [documentation](https://colmtalbot.github.io/gwmemory/) and in the examples directory.