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src/main/resources/morph.models/fxtemplates Expand file tree Collapse file tree Original file line number Diff line number Diff line change 2323 </populationModel>
2424 </plugin>
2525
26- <plugin id='TreeHeight.t:$(n)' spec='beast.base.evolution.tree.TreeHeightLogger ' tree='@Tree.t:$(n)'/>
26+ <plugin id='TreeHeight.t:$(n)' spec='beast.base.evolution.tree.TreeStatLogger ' tree='@Tree.t:$(n)'/>
2727
2828 <logger id='treelog.t:$(n)' spec='beast.base.inference.Logger' logEvery="1000" fileName="$(tree).trees" mode='tree'>
2929 <log id='TreeWithMetaDataLogger.t:$(n)' spec='beast.base.spec.evolution.TreeWithMetaDataLogger' tree='@Tree.t:$(n)'/>
3939 <!-- MK subst model -->
4040 <substModel spec="morphmodels.evolution.substitutionmodel.LewisMK" id="LewisMK.s:$(n)" datatype='@morphDataType.$(n)'/>
4141 </siteModel>
42- <branchRateModel id="StrictClock.c:$(n)" spec="beast.base.evolution.branchratemodel.StrictClockModel">
42+ <branchRateModel id="StrictClock.c:$(n)" spec="beast.base.spec. evolution.branchratemodel.StrictClockModel">
4343 <clock.rate id="clockRate.c:$(n)" spec="beast.base.spec.inference.parameter.RealScalarParam" domain="PositiveReal" value="1.0" estimate='false'/>
4444 </branchRateModel>
4545 </distribution>
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